Flavobacterium commune: BIW12_02685
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Entry
BIW12_02685 CDS
T05006
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcm
Flavobacterium commune
Pathway
fcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIW12_02685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcm03019
]
BIW12_02685
03009 Ribosome biogenesis [BR:
fcm03009
]
BIW12_02685
Enzymes [BR:
fcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BIW12_02685
Messenger RNA biogenesis [BR:
fcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIW12_02685
Ribosome biogenesis [BR:
fcm03009
]
Prokaryotic type
rRNA helicases
BIW12_02685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOZ98424
UniProt:
A0A1D9P7Z7
LinkDB
All DBs
Position
647011..648876
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AA seq
621 aa
AA seq
DB search
MNKFEQLGLSESLLKAIIDLGFENPSEVQEKAIPLLLEKDTDLVALAQTGTGKTAAFGFP
VIQKIDADNRNTQALILSPTRELCLQITNELKNYSKYVKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVNITQINYCILDEADEMLNMGFYDDIVNILSTTPDEKNT
WLFSATMPAEVARIGKQFMTNPEEITVGTKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINDVLEGLTKEELIKKM
VSVEFNRFINYYKKTRDISASGSDRRERGDDRAPRENNNGGATRYFVNIGSRDNFDWMTL
KDYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTDKVMDILNNVQLEGRRINVEISKNDG
GGRRDHNGRNSGGRREGGRREGNFAPRREGGFRSERNSAPREGSFRSERSTAPRREGSSD
RAPRRSESFGDSSRPRRPRRD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattaagcgaatcgttactgaaggcgattattgatcta
ggatttgagaatccgtcagaagtacaggagaaagcgattcccctattattggaaaaagat
acagatttagttgcgttggctcagactgggacagggaaaacggcagcttttggttttcca
gttatccaaaaaattgatgccgacaatagaaatacgcaggcgttgattttatctccaacg
cgcgagctttgcttacagataaccaacgaacttaaaaactactctaaatacgtaaaaggt
attaatgtggtagcagtttatggaggagctagtattacagaacaagcgagagacattaag
agaggagcacaaattattgtggctactccaggtagaatgcaggacatgattaacagagga
ttagtaaatatcactcaaattaattactgtattcttgacgaagcagacgaaatgttgaac
atgggattctatgatgatatcgtaaatatcctttcaactaccccagacgaaaaaaacact
tggttgttttctgcaactatgccggcagaggttgccagaattggtaaacaattcatgact
aaccctgaagaaattactgttggtactaaaaactcaggttcagcaacggtttctcacgaa
ttttacttagtaaatgcccgtgatcgttacgaagctttaaaacgtttagccgatgctaac
ccggacattttctcagtagttttttgtagaacaaaacgtgatacacaggctattgcagag
aaattaatcgaagacggatacagtgccgctgctttgcacggagatttatctcaggcacaa
cgtgacggtgtaatgaaatcgttcagaggaagacaaatccaaatgcttgttgcaactgac
gttgctgctcgtggaattgacgttgacaatgtaactcacgtagtaaactaccaattgcca
gacgaaattgaaacttacaaccaccgttcaggtcgtacaggtcgtgcaggtaaattagga
acttcgattgtgattgttactaaaagtgaattgcgtaaaatttcttctatcgaaagaatc
atcaaacaaaaatttgaagaaaaaacaattccttccggaatcgaaatttgcgaaattcaa
ttattacacctagccaacaaaattaaagatactgaagttgatcacgaaattgacaactac
ttaccagctatcaatgatgttcttgaaggtttaaccaaagaagaattgattaagaaaatg
gtttctgttgaatttaaccgtttcatcaattactataagaaaaccagagatatttctgct
tcaggttctgacagacgtgaacgtggtgacgatcgcgctccaagagaaaacaacaatggt
ggtgctacacgttattttgtgaacattggttcaagagataacttcgactggatgacattg
aaagattatctgaaagaaacactagacttaggtcgtgatgatgttttcaaagttgacgta
aaagaaggtttctctttcttcaatactgatccggaacatactgataaagtaatggatatt
ttaaacaacgtgcaactggaaggacgtcgtatcaatgttgaaatttccaaaaatgatggt
ggcggaagacgtgaccataacggaagaaattctggtggaagacgcgaaggcggaagacgt
gaaggaaattttgctccaagaagagaaggcggattcagaagcgaaagaaactcagctcca
agagaaggcagtttcagaagcgaaagaagtacagctcctagaagagaaggttcttctgat
agagcccctagacgttctgaaagctttggtgattcatccagaccaagaagaccaagaaga
gactaa
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