Flavobacterium commune: BIW12_03000
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Entry
BIW12_03000 CDS
T05006
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fcm
Flavobacterium commune
Pathway
fcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIW12_03000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcm03019
]
BIW12_03000
03400 DNA repair and recombination proteins [BR:
fcm03400
]
BIW12_03000
Enzymes [BR:
fcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIW12_03000
Messenger RNA biogenesis [BR:
fcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIW12_03000
DNA repair and recombination proteins [BR:
fcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BIW12_03000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AOZ98482
UniProt:
A0A1D9P7I7
LinkDB
All DBs
Position
complement(720305..722500)
Genome browser
AA seq
731 aa
AA seq
DB search
MNSNEIDIHKELKKYFGFSQFKGLQEQVITSLMNKQNTFVIMPTGGGKSLCYQLPALIQE
GTAVVVSPLIALMKNQVDAIRSLSSENGIAHVLNSSLTKTETAQVKKDITSGLTKLLYVA
PESLTKEENVSFLKSVPISFVAIDEAHCISEWGHDFRPEYRNLKNIIKQLGDVPVIGLTA
TATPKVQEDILKNLEMSNAVTFKASFNRPNLYYEVRTKTKNVESDIIRFIKQHKGKSGVI
YCLSRKKVEAIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE
IGFALLQEVVAYAETSMSRRKFLLHYFGEEFDSETGEGADMDDNVRNPKTKVEAKNEVVK
LLEVVRDTKHLYKSKEIVFTLIGRVNAVIKAHRTDSQSFFGCGVAHDEKYWMALLRQVLV
EGFLSKDIETYGIVKITQKGLDFIANPTSFMMSEDHEYSDAEDEAIVTAAKSAGTADEAL
MEMLRDLRKKVAKKLGVPPFVVFQEPSLEDMALKYPISQAELINIHGVGEGKAKKYGAEF
IALINRYVEDNDIIRPDDLVVKSTGTNSANKLYIIQNIDRKLSLDDIAKAKGLTMDALIK
EMEQIVYAGTKLNIKYWIDDMLDEDQQEEIHDYFMESKTDKIEEALKEFEGDYDIDELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaacgaaattgatatccataaagaattaaagaaatattttggctttagtcaa
tttaagggattacaagaacaagtgattacaagcttaatgaataagcaaaatacatttgtg
ataatgcctacaggtggagggaaatcgttgtgttaccaactacctgctttaatacaggaa
ggaactgcagtagtagtttctccattaattgctttaatgaaaaatcaggttgatgctata
cgaagtttgtcttcagaaaatggtatcgcccatgttttaaattcttcgcttactaaaaca
gaaaccgctcaggttaaaaaagacattacttcaggattgactaaattgctatatgttgct
ccggaatcattaaccaaagaagagaatgtcagtttcttaaaaagtgtacccatttctttt
gttgctattgatgaagcacattgtatctcagaatgggggcatgattttagaccggaatac
agaaatctaaaaaacattataaaacagttgggcgatgtacctgtaataggacttactgct
acagcaactccaaaggtgcaggaagatattttgaagaatttagaaatgtctaatgcggtt
acttttaaagcttcgtttaacagacctaatttgtattacgaagtacgtaccaaaacaaag
aacgtagaatcggatattattcgatttatcaaacaacataaaggaaaatcaggtgtaatc
tactgtttgagccgaaaaaaagttgaggccattgctgaggtgttaaaagtgaatggtatt
agtgctgttccatatcacgccggattggatgctaaaacccgagccaaacatcaggatatg
tttttgatggaagatgtagaggttgtggttgcaaccattgcttttgggatgggaattgat
aaacccgatgtacgctttgtaattcaccatgatattcctaaatctttagaaagctattat
caggaaacaggtcgcgcgggtcgtgatggaggcgaaggacattgtttagcctattattct
tataaagatgtggagaaattagaaaaattcatgtcaggaaaaccggtagctgagcaggaa
attggcttcgctttattacaggaagtggtagcttatgccgaaacttctatgtccagaaga
aaatttttactgcattattttggtgaggaattcgacagtgaaactggagaaggagccgat
atggatgacaatgtcagaaatccaaaaactaaggttgaggctaagaacgaagttgttaaa
ttgcttgaagttgttcgtgataccaaacatttatataaatctaaagaaattgtatttacg
ttgataggacgcgtaaatgctgttattaaggcacatcgtaccgattcgcaatcttttttt
ggttgtggtgtggctcatgacgaaaagtactggatggcattgttgagacaggttttggta
gaaggctttttatcaaaggatattgaaacttacgggattgtaaaaattacccaaaaagga
ttggattttatcgcaaatcctacttcgtttatgatgtctgaagatcatgaatacagtgat
gctgaagatgaggcaattgtaaccgctgcaaaatctgctggtacggccgatgaggctttg
atggaaatgttacgtgatttgcgtaaaaaagtagccaaaaaattaggagtgcctccgttt
gtggtttttcaagaaccttcattggaagatatggctttgaaatatcctatttctcaagcg
gaattgattaatattcacggggtaggagaaggtaaggctaagaaatatggcgctgaattt
attgcgttaatcaatagatatgttgaggataacgatattatcaggcctgatgatttggta
gtgaaatctacaggaactaattcagctaataaattatatatcattcaaaacatcgataga
aaattgtctttagatgatattgctaaggcaaaaggattaacaatggatgctttgattaaa
gaaatggagcaaattgtatatgctggaacaaaactgaatataaaatattggatagacgat
atgcttgatgaagatcagcaggaagaaattcacgattattttatggaatctaaaaccgat
aaaatagaagaagccttaaaggaatttgaaggagattatgatatcgacgaattgcgttta
atgcgaattaaatttataagtgaagtagcgaactag
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