Flavobacterium commune: BIW12_07725
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Entry
BIW12_07725 CDS
T05006
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fcm
Flavobacterium commune
Pathway
fcm03410
Base excision repair
fcm03430
Mismatch repair
fcm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BIW12_07725
03430 Mismatch repair
BIW12_07725
03440 Homologous recombination
BIW12_07725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcm03400
]
BIW12_07725
DNA repair and recombination proteins [BR:
fcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BIW12_07725
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BIW12_07725
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BIW12_07725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ATP-synt
DSPc
Toprim
Motif
Other DBs
NCBI-ProteinID:
AOZ99339
UniProt:
A0A1D9P9T7
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All DBs
Position
complement(1854673..1856361)
Genome browser
AA seq
562 aa
AA seq
DB search
MRWTLKPKPSEDKIKHLAQALNVEDFVAQLLVQRGIETFEEAKHFFRPSLEHLHDSYLMK
DMDKAIERIENAIENQERILVFGDYDVDGTTAVSLVSSYLKSFYPNVATYIPDRYDEGYG
VSFKGIDFADDNGFSLIIALDCGIKSIDHVAYAKERNIDFIICDHHRPGDTLPEAVAVLD
PKRNDCNYPYDELCGCGIGFKLIQALGLNRNQTIEDLAPYLDLVATAIAADIVPMTGENR
VLAYFGLQVINNNPRPGIKALIHQVKKQKLDITDVVFIVAPRINAAGRIKHGNHAVELLS
EFNFEQAQQFASEIEKYNADRKDLDKHITKEAFQQIEQNQEQKRFTTVVFQEDWHKGVIG
IVASRLIETYYRPTLVFTKSGDKYAASARSVKGFDVYNALEACSEHLEQFGGHMYAAGMT
LKAEKYAVFKEAFEKQVQETIHPDQLIPEIEIDAEINFSDITPKLSRILKQFEPFGPQNM
TPVFLTKNVIDTGYAKKLGAEDEHLKLFVKQNNSEGIAAIGFGLGNKIDLTTNQKTFQIA
YCIDENEWNGKVSTQLRLKSIQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggactcttaaacccaaaccttcggaagacaaaatcaaacatttggcgcaagcc
ttaaacgttgaagattttgttgcccaattgttagtacaacgcggcattgaaacttttgaa
gaagccaaacatttttttcgtccttccttagaacatttacacgattcttatctaatgaag
gatatggataaggcaatcgaaagaattgaaaacgccatcgaaaaccaggaacgcattctt
gtttttggggattatgatgtagatgggacaacagcagtttcgcttgtttcttcttattta
aaaagtttttaccccaatgtggccacttatattccggatcgttatgacgaaggttatggc
gtttcttttaaaggaattgactttgctgatgacaatggtttttcattaattattgcacta
gattgcggtattaaatcgattgatcatgtggcttacgccaaagagcgaaacatcgatttc
attatttgtgaccaccaccgccccggagatactttacccgaagccgttgctgttctcgac
ccaaagagaaacgattgcaactatccttatgatgaattatgcggttgcggaattggcttt
aaactcattcaggctttgggattgaatagaaatcaaactatcgaagatttagctccttat
ttggatttggttgccaccgccattgctgccgatattgttccaatgactggcgaaaaccgg
gtattggcttattttggtttgcaagtcatcaacaacaatccaagaccgggaattaaagct
ttgattcatcaggtaaaaaaacaaaaattagacattaccgacgttgtttttatagttgca
ccccgaatcaatgccgcaggacgcatcaaacacggcaatcatgcagtggaattgttaagc
gaatttaactttgaacaagcgcaacaatttgcttctgaaattgaaaaatacaatgccgac
cgcaaagatttagacaagcacattaccaaagaagcttttcagcaaattgaacaaaatcag
gaacaaaaacgttttacgaccgtagtttttcaggaagactggcacaaaggcgttatcgga
attgtagcttcccggttaatcgaaacttattatcgtcctaccttggtttttaccaaaagt
ggcgataaatatgctgcttcagctcgctcagtaaaaggatttgatgtttacaatgcgtta
gaagcctgttcggaacatttagagcaatttggaggacacatgtatgccgcaggaatgact
ttaaaggctgaaaaatatgctgttttcaaagaagcttttgaaaaacaagtgcaggaaacc
atccatcctgaccaactaatccctgaaatagaaattgatgccgaaatcaacttttcggac
attacaccaaaactcagccgaatcctgaaacaattcgaaccttttggtcctcaaaacatg
acacctgtttttttaaccaaaaatgttatcgatactggttatgctaaaaaactgggtgca
gaagacgaacatttgaaactatttgtaaaacaaaataactccgagggcattgccgctata
ggttttggattagggaacaaaatcgatttaaccaccaatcaaaaaacatttcaaattgct
tattgcattgatgaaaatgaatggaatggtaaagtttcaactcaattacgattaaaaagc
attcaataa
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