Francisella hispaniensis 3523: FN3523_0641
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Entry
FN3523_0641 CDS
T02078
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcn
Francisella hispaniensis 3523
Pathway
fcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FN3523_0641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcn03019
]
FN3523_0641
03009 Ribosome biogenesis [BR:
fcn03009
]
FN3523_0641
Enzymes [BR:
fcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FN3523_0641
Messenger RNA biogenesis [BR:
fcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FN3523_0641
Ribosome biogenesis [BR:
fcn03009
]
Prokaryotic type
rRNA helicases
FN3523_0641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Utp25_C
SNF2-rel_dom
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AEB28498
UniProt:
F4BK04
LinkDB
All DBs
Position
654006..655718
Genome browser
AA seq
570 aa
AA seq
DB search
MDSETKKDFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNIDLRSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHI
SEQCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLEIEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSD
ILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKDLAQSRVEHFKARVISGLDKNKSLDKYKEIITSIRDELEL
DSEELLAVLTLLAQGKKTFFPREIQAKEEKPTRDNRNSRDGRKNERFERRNDQDNRAKRF
DKADRKPRRAVVNIDLTTYKLDVGRDNDVQPRNIVGAIANEGNIDSKHICNISIQKDYTL
VDLPANLSPKVINHLKKVWVAGKKLNLTAQ
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggattctgaaactaaaaaagattttagtcagcttgggctgagtcaagatattgtggat
actgttatcaacttaggatatgaaacgcctacaccaattcagcagtatgctattccatat
atcttatcgggtagagatgtgctaggacaagcacaaacgggtacgggtaaaactgcagca
tttgcattaccattgataaataacattgatttaagatctagagataaatcaccacaagtt
ttggtattagctcctactagggaattagctatacaggttgcagagcagtttcaagcattt
gctaaaaatataccaaatttagatgttgcttgtatctatggtggtcaagaatatggttct
caaataagagcgcttaagcaaggtgtaaaagttgtagttggtacgactggtcgagtaatg
gatcatatcgagaaaggcacattacaacttgataatctaagagcattagttttagatgag
gctgatgaaatgctcagaatgggctttattgatgatgttagatttgtcttaagtcatatt
tctgaacaatgccaaagattacttttctcagcaacaattcctactgatattgctgatatt
atcgaagagtacttaagaaatccttgtaagatacaagtaaaggcaaagacaaaaactgcc
aacacagttacacaaaaatttatcgtaatcaaaggctttagaaagatagatgctttagat
agattacttgagatagaagaaactgatggtgttattatctttgttaagactaagacaagt
actatagaagtagcagataatttaaaagctcttggttataaagtagcagctataaatggt
gatatgcaacaatcacagcgtgaatatattgttgatcagtttagaaatgctaaatcagat
atcctcgttgctacagatgtagtagctaggggcatagatcttgagcgtattagtcatgtg
attaactatgatatgcctaatgatactgatacatatgtacatagaattgggcgtacaggt
agagcagggcgtgaaggcacatcaatttctttagtaccacttaaagagatgagattttta
cgtactttagagagatttacaggttcgccaatgcaagaagtatttatgccaagtgcgaaa
gatttagctcaaagtagggtagaacattttaaagctagagtaatttcaggattagataaa
aataagtctttagataaatataaagaaattattacaagtattcgcgacgaattagagcta
gattcagaagaacttttagctgtacttactttgttagcacaaggtaaaaaaactttcttt
ccaagagagattcaagctaaagaagaaaaaccaactcgtgataatagaaactctagagat
ggtagaaaaaatgaaagattcgagcgtagaaatgatcaagataatagagctaaacgtttt
gataaagcagatagaaaaccgcgtcgtgctgtagtaaatattgatttaactacttataag
ctagatgtcggtcgtgataatgatgttcaaccaagaaatattgttggagctatagctaat
gaaggaaatattgatagtaagcatatctgtaatatttctattcaaaaagattatacatta
gttgatttaccagcaaatctttcaccaaaagtgataaatcatctaaaaaaagtctgggtt
gctgggaagaagttaaatcttacggctcagtaa
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