Francisella hispaniensis 3523: FN3523_1160
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Entry
FN3523_1160 CDS
T02078
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fcn
Francisella hispaniensis 3523
Pathway
fcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FN3523_1160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcn03400
]
FN3523_1160
Enzymes [BR:
fcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FN3523_1160
DNA repair and recombination proteins [BR:
fcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FN3523_1160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
UB2H
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AEE26463
UniProt:
F4BG69
LinkDB
All DBs
Position
1170088..1173516
Genome browser
AA seq
1142 aa
AA seq
DB search
MLNNQIFANDTIVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKDN
PKIDILFFPNLEILPYDRFSASIDIISRRQEILHKMTHQPQNTLIITSISNTLRKLAPTS
FIQEHSFILKTGDKLDITKYKILLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFR
IDLFDDEVDSIKELNTETQRSGNQIQSINIMPSHELVYNDQNTTFALDKLKRLCGEKALN
STIATYIRYNEYFSGIEFYLPLFYDKLTSLYDYLPQSTNIHLVDNISNSTEAFSDEVKFR
YNELKHDSDRPILPYQEIFYSQQEIQDIYREYKNIKWFQQPKSKSKTLKVEHLEKISANY
KLANPFRDLQQLLNKANFDKVIFSTDSNGRAEVLLEHLNKLNLNIQSCKSFNQALEVTAK
FCLIISPFQEGIIIDKKIVLITEADLFPEHSYNSTKISQHDHHPSIDLKDLTDLKPGMHV
VHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALN
KLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETP
DQLLAINDVFKDMISTKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQ
QHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFENLKKGTVDIIIGTHKLISSKIDFKNL
GLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR
LSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHG
QMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV
GRSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQ
SGNIDGIGLNLYMDLLDKTIANLKAGKELNIEEVINSTICEVELNIPTLIPDYYINDVNT
RLNIYKRISKANHKELVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGITQIKMFAT
SGKISFSNNTKFEPQKLIKIIQSQPSDFKLTKEQDLLIIKATKTAEQRIEFIENFLKRIK
VD
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcttaataaccaaatatttgctaatgatacaattgtatctaatgcttatggctctgct
tttagtattttatttaacgaatatctcaagcaaaataatcagtttaatttaatagtaact
gaagactcacaacaagcacataagatatacaaagaattaaaatatctaaataaagataat
ccaaagatagatatcttattttttccaaatttagaaatccttccttatgatagattctca
gcttctatagatattatttctagacgccaagaaattctacataaaatgacacaccaacca
caaaatactctaataatcacaagcatctcaaatacattaagaaaactagcaccaacaagc
tttatacaagagcatagttttatactcaaaacaggtgataaattagatatcactaaatat
aaaatactacttacagaagcaggttatactttagtaaacaatgtttttgaaaaaggtgaa
tttagtattcgcgggagtattattgatatatatcctatcggctcaaaagttgcatttagg
atagatctttttgatgatgaagttgatagtatcaaagagcttaatactgaaactcaacgt
tctggtaatcaaatccaatcaatcaatattatgccatctcatgagctagtatataacgat
caaaatactacttttgctttggataagctcaagagattatgtggtgaaaaagctcttaat
tcaactatagcaacatatataagatataatgaatatttcagtggtattgagttttattta
cctttgttttatgacaagcttactagtctttatgattatctaccgcaatcaacaaatatt
cacttagttgataatattagtaattctactgaagctttctctgatgaagtaaaatttaga
tataatgaacttaagcatgatagtgatagaccaattctaccctaccaagaaattttttac
tcacagcaagaaatacaagatatctaccgggaatataaaaatatcaaatggtttcagcag
ccaaagtcaaaatctaaaacacttaaagtagaacatttagaaaaaatctcagcaaactat
aagcttgcaaatccatttagagatttacaacagcttttaaataaagctaactttgacaaa
gttattttctcaactgattcaaacggacgtgctgaagtgcttctagagcacttaaataaa
cttaatctaaatatacaaagctgtaaaagttttaatcaagccttagaagtaactgctaaa
ttctgcttaataatttctccttttcaagaagggataattatagacaaaaaaattgtttta
attacagaagcagatttatttcctgaacatagctataactccaccaaaatttcacaacat
gatcatcatcctagtattgatcttaaagaccttacagatttaaaaccaggaatgcatgtt
gtccatattgaccatggtataggtagatatgaaggcttagaaagtattgagctaaatggt
aaaaaagatgagtttatattactaagatatgcaaatgatgccaaaatctatgtgccaata
acatcattaaatctaatctctatttataattcttctcttaccgaaaaaatagctctaaat
aaacttggtacagataagtggaaaaaacaaaaagaaaaaactattaaaaagattattgat
gttgcggctaatcttctcgaaatttatgcaaaaagagaaatgcgtcaaggttttagcaat
agcttagatgaggaagaataccttagattttgcgcagactttccttatgaggaaactcct
gatcagcttttagctattaatgatgtatttaaagatatgatctcaacgaaacctatggat
agactaatctgtggtgatgtaggttttggtaagacagagattgccatgcgtgcagcattc
cttgcaacacaaaatcaaaaacaagttgccattttagtacctacaacaattttagctcaa
caacattataatagctttaaagataggttcactaatactgcagttaatattgaagtaatc
acccgttcaaaaacaccaaaagctcagcaacaactttttgaaaatctcaaaaaaggaact
gtagatataattattggcactcataaactaatttcatcaaaaattgactttaaaaattta
ggtttactaattattgatgaggagcatcgttttggtgttgcacaaaaagaaaagttaaag
gctctaaaagccgaaatagatattttgactatgtctgcaacacctattccgcgtagttta
agtatggcattctcagcattaagagacttatcaattatcgcttcacctcctgcaaagcgc
ttatcagttaagacttttgtcaaagaatatgataacaatataattcgtgaagcggtaagt
cgtgaaactatccgtggtgggcagattttttatctttataataaggttgaaactattcaa
aagaaaaaagaaatccttcaagagttgtttcctcgcttaagaatagctatagctcatgga
caaatgagtgagaaagaaatccaaaaagttatgtttgattttaaacataacaagtatcat
atcctactgtgtacaacaattattgaaacaggtattgatataccaaatgccaatactcta
attattgaagatgctaataatttaggcttagcccaacttcatcaactaagaggtagagtt
ggtcgttcacatcatcaagcttatgcatatatgctaatacctaatgaagcaagtattact
aaagatgctctaaaaaggcttgaggctatcagcaacactgaatcactaggaggtggtttt
actttagctaatcatgatttagaaattcgtggcgctggtgaaatactcggagaggaacaa
agtggtaatatcgatggtattggtttaaatctatatatggatttactcgataaaactatt
gcaaatctaaaagctggtaaagaacttaatattgaagaagttattaactctacaatctgc
gaagtagagttaaatattccaacactaattcctgactattatattaatgatgttaatact
cgtttgaatatctataaacgtatctctaaagctaatcacaaagaactagttaatatcaag
attgagctaattgatcgcttcggtaaactacccttagaagttctttatctactaaaagta
gcacatataaaaatagatgcaatagcactaggaattactcaaataaaaatgtttgcaaca
tctggcaaaattagtttctcaaacaatacaaaatttgaaccacaaaaactaataaaaatt
atccaatcccagcctagtgattttaaacttactaaggaacaggatctactaattataaaa
gccacaaaaactgcagaacaaagaatagagtttatcgaaaactttttgaagagaataaaa
gttgattaa
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