Flavobacterium columnare: FCOL_00970
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Entry
FCOL_00970 CDS
T01653
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fco
Flavobacterium columnare
Pathway
fco03410
Base excision repair
fco03430
Mismatch repair
fco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FCOL_00970
03430 Mismatch repair
FCOL_00970
03440 Homologous recombination
FCOL_00970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fco03400
]
FCOL_00970
DNA repair and recombination proteins [BR:
fco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FCOL_00970
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FCOL_00970
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCOL_00970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DSPc
Motif
Other DBs
NCBI-ProteinID:
AEW85043
UniProt:
G8X8A6
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All DBs
Position
236352..238040
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AA seq
562 aa
AA seq
DB search
MRWTLKSKPNDQKVQALQNVLQVDSIVATLLIQRGIDTFDEAKKFFRPSLSDLHDPYLMK
DMDKAVDRIEKAISYNENILVFGDYDVDGTTAVSLVSSYLKSFYPNVATYIPDRYAEGYG
VSFKGIDFAEDHNFTLIIALDCGIKSIDHVKYASQKGIDFIICDHHRPGSVLPDAVAILD
PKREDCFYPYKELCGCGVGFKLIQALASKRNQTIQELVPYLDLVATAIGADIVPITGENR
VLAKFGLEVINTSPRPGIQALILNIKKKELTISDVVFIIAPRINAAGRIKHGNYAVSLLT
EFDLLQASQCAADIEIFNSDRKDLDKQITEEALEQIIQNQEIDRFSTVVYQENWHKGVIG
IVASRLVENYYRPTIVFTKSGDKLAASARSVKDFDIYNALEACAEHLEQFGGHMYAAGMT
LKEENYIAFKKAFEQTVKESIHPDLLIPEISIDAEIQLEDITPKLMRILKQFEPFGPENM
TPVFISKSIHDTGYGKAVGQNDEHLRLFVKQNMSASYSAIGFGIGKKQILTSNLRRFDAV
YSIEENEWNGSVSLQLRLRDIR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacgttaaaatcgaagccaaatgatcaaaaagtacaagctttacaaaatgta
cttcaagtagattctattgtagcaactcttttaatacaaagagggatagatacatttgat
gaggctaaaaaattttttagaccatctttatctgatttgcatgatccttatcttatgaaa
gatatggataaagcggtagatcgaattgaaaaggctatttcatataatgaaaatatttta
gtttttggtgattatgatgtagatggcacaacagctgtatccttagtttcctcttatcta
aaaagtttttatcctaatgtggctacctatatacctgatcgttatgcagaaggatatggc
gtttcttttaaaggaattgattttgctgaggatcataattttactttaattatagcttta
gactgtggtattaaatctatagaccatgtaaaatatgcttctcaaaaaggaattgatttt
attatttgcgatcatcacagaccaggatctgttttaccagatgcggtagccatcttagat
cctaaaagagaagattgtttttatccttataaagaattatgtggctgtggagtaggattt
aaattaatacaagcattagcctctaaaagaaatcaaacaattcaagaattagttccctat
ttagatttagtagctacggctataggagctgatatagtacctataacgggagaaaacaga
gttttagctaaatttggattagaagtaattaatacatctcctaggccaggtatacaagct
ttaatcttaaatataaagaaaaaagagctaactatttcagatgtagtatttattatagca
ccacgaataaatgcagcaggaaggataaaacatgggaattatgcagtatcattattaaca
gaatttgatttgttacaagcgtctcaatgcgccgctgatattgaaatttttaattcagat
agaaaagatctagacaaacaaataacagaagaagctctcgaacaaattatacaaaatcaa
gaaatagatcgtttttctacggtagtttatcaagaaaactggcataaaggagttatagga
atagtagcttctcgtttggtagaaaattactatcgtccaactattgtttttacaaaaagt
ggcgataaattggccgcatccgctcgttcagtaaaagattttgatatttataatgctcta
gaagcctgtgctgaacatttagaacaatttggagggcacatgtatgctgcgggtatgaca
ctaaaagaagaaaattatattgcttttaaaaaagcattcgaacaaacagtaaaagaatct
attcatcctgatttattgataccagaaatcagtatagatgcagaaatccaattagaagat
attacccctaaattaatgcgtattttaaaacaatttgaaccttttggaccagaaaacatg
acccctgtttttatatcgaaatcaatacatgatacaggttatggcaaagcagtcggtcaa
aacgacgaacatcttcgtctttttgtgaagcagaatatgagtgctagttatagtgcgata
ggttttggtattggaaaaaaacaaatactaacgtctaatttacgaagatttgatgcggta
tattccattgaagaaaatgaatggaatggaagcgtttcgttacaacttagattaagagat
ataaggtaa
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