Flavobacterium columnare: FCOL_03730
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Entry
FCOL_03730 CDS
T01653
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fco
Flavobacterium columnare
Pathway
fco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCOL_03730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fco03019
]
FCOL_03730
03016 Transfer RNA biogenesis [BR:
fco03016
]
FCOL_03730
Enzymes [BR:
fco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FCOL_03730
Messenger RNA biogenesis [BR:
fco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FCOL_03730
Transfer RNA biogenesis [BR:
fco03016
]
Prokaryotic type
tRNA degradation factors
FCOL_03730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AEW85586
UniProt:
G8X5Y3
LinkDB
All DBs
Position
875551..877719
Genome browser
AA seq
722 aa
AA seq
DB search
MIPKVFQEVIDLGDGRTITIETGKLAKQADGSVVVRMGDAMLLATAVSARTANPGIDFLP
LTVDYREKFAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPDDYHAETQIMIQLM
SHDDDVMPDALTGLAASASLAVSDIPFYNFISEVRVGRVDGKLIINPNRTQLEKSDIDMM
IGASKDSVCMVEGEMKEISEAEMIEAIKFAHEAIKAQIEAQEKLRAAIGTLTYREYEAEK
NNEAVYNKVKEACYEKFYAVAQEASAKHERGEKFAAIAEEVKALYSEEEYTENEDLKELV
SRYIYKTQKAAVRNVILEQGTRLDGRKTTEIRPIWSEIDYLPSAHGSAIFTRGETQALAT
VTLGTSREANVIDLPSEQGEERFYLHYNFPPFSTGEAKPLRGTSRREIGHGNLAQRALKN
MIPSDCPYTIRVVSEVLESNGSSSMATVCSGTLALMDAGVQMIKPVSGIAMGLITDGEKF
AVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIDGLRYDIMEQALAQARDGRMHILN
KIIETIAEPRTAVKPKAPKIIMSSIPASMIGAFIGPGGKNIQELQKSTETTIVLTEEGDK
GIVEILGTNQTGIDAVLAKIEAMIFKPQLGEAYEVKVTKMLDFGAVVEYTRAPGNEVLLH
VSELAWERTEKPSDVINLGDVFMVKYLGIDPKNKKEKVSKKQLLPRPPREEKKDDKKTNP
QG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgatcccaaaagtatttcaagaggttatcgatttaggagacggaagaaccatcacaatc
gaaactgggaaattagccaaacaagccgatgggtctgtagttgtgcgaatgggcgatgct
atgcttttagcaacagctgtttctgctagaacagctaaccctggaatagattttctacct
ctaacagtagattatcgcgaaaaatttgctgcagcaggtcgttttcctggaggcttcttc
aaaagagaagcgcgtcctagcgacagcgaagtgttaaccatgcgcttagtagaccgcgta
ttacgccctttattcccagatgactaccatgctgaaacacaaatcatgatccaattaatg
tctcatgatgacgatgttatgcccgatgcactaacaggtttggctgcttcagcatcatta
gccgtttcagatatccctttttataactttatttcagaagttcgagtaggtcgcgtagac
ggcaaattaatcattaaccctaacagaacacaacttgaaaaatccgatattgacatgatg
atcggagcttccaaagattctgtttgcatggtagaaggtgaaatgaaagaaatttcagaa
gccgaaatgatagaagctattaaatttgctcatgaagccatcaaagctcaaattgaagca
caagaaaaattacgtgcagccattggcactctaacctaccgcgaatacgaagcagaaaaa
aacaacgaagccgtttacaacaaagtaaaagaagcttgttatgaaaaattttacgcagta
gctcaagaagcgtctgcaaaacatgaaagaggtgaaaaatttgcagctattgcagaagaa
gtaaaagccttatattcagaagaagaatatactgaaaacgaagatttaaaagaattagta
agcagatatatctacaaaacacaaaaagcagctgttcgtaacgtaattcttgaacaagga
actcgtctagacggccgtaaaacaactgaaatccgtccaatttggtctgaaatcgattat
ttaccatctgctcatggttcagccattttcacacgtggtgaaacacaagctttagctact
gtaaccctaggcacctctagagaagccaacgttattgatttaccttctgaacaaggtgaa
gagcgcttttacttacactataacttccctcctttttctacaggcgaagcaaaaccatta
agaggtacttcacgtcgtgaaatcggacatggtaatttagcacaacgcgcacttaaaaac
atgattccatcagattgtccttataccattcgcgttgtatcagaagttttagaatctaac
ggttcttcttctatggcaaccgtatgttcaggaacgttagcattaatggatgctggtgta
caaatgattaaacctgtttctggtattgcaatgggacttattacagacggagaaaaattt
gccgtattatcagacatcttaggcgatgaagaccacttaggtgatatggatttcaaagta
acaggtacagccgatggtatcacagcttgccaaatggatattaagattgatggactacgt
tacgacatcatggaacaagcattggctcaagctcgtgatggacgtatgcacatcctaaac
aaaatcattgaaaccattgcagaaccaagaaccgctgttaaaccaaaagcaccaaaaatc
atcatgagctctattccagccagtatgattggagcatttattggcccaggaggtaaaaat
attcaggaattacaaaaatctactgaaacgaccattgtattaacagaagaaggagacaaa
ggaattgttgaaatcctaggaaccaaccaaacaggtatagacgctgtcttagctaaaatt
gaagccatgatattcaaacctcaattaggcgaagcttacgaagtaaaagtaactaaaatg
cttgactttggcgcagtagtagaatacaccagagcacctggaaatgaagtcttattacac
gtttctgaattagcttgggaacgcacagaaaaacctagtgacgtaatcaatttaggagat
gtctttatggttaaatatttaggcatagaccctaaaaataaaaaagaaaaagtttcaaaa
aaacaattacttcctcgccctcctcgcgaagaaaaaaaagacgataaaaaaacaaaccca
caaggttaa
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