Flavobacterium columnare: FCOL_03735
Help
Entry
FCOL_03735 CDS
T01653
Name
(GenBank) RpoD family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
fco
Flavobacterium columnare
Pathway
fco02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FCOL_03735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fco03021
]
FCOL_03735
Transcription machinery [BR:
fco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FCOL_03735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
DUF6285
GPW_gp25
Motif
Other DBs
NCBI-ProteinID:
AEW85587
UniProt:
G8X5Y4
LinkDB
All DBs
Position
877846..878709
Genome browser
AA seq
287 aa
AA seq
DB search
MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDQRALEKLTKANLR
FVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKMYALLEQSNERAPSAEEIAAELDMTVNDVKESMKNSGRHL
SMDAPLVEGEDSNLYDVLRSGESPNPDRELIHESLRTEIERSLETLTPREADVVRLYFGL
GDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacagctcaaaattactaagcaggtaaccaatcgtgaaactgcttccctagacaaa
tacctacaagaaattggtaaagtagatttaatcactgcagatgaagaagtggaattagca
caacgcatcaaggctggtgatcaaagagccttagaaaaattaacaaaagccaacttacgt
ttcgtagtatccgtagcaaaacaatatcaaaatcaaggtttaactcttcccgatttaatc
aatgaaggaaatttaggattgattaaagcagctcaacgttttgatgaaacacgtggtttc
aaatttatctcatacgctgtatggtggattcgtcaatctatactacaagctttagcagaa
caatctcgtattgtacgccttcctttaaacaaaattggttctattaacaaaatcaataaa
atgtatgctctcctagagcaatctaatgaacgcgctccatctgctgaagaaatagcagct
gagttagacatgactgtaaatgacgtaaaagaatcaatgaaaaactcaggacgccattta
tctatggatgccccattagtagaaggtgaagattccaatttatatgatgtactacgatct
ggagagtcaccaaatcctgatagagaattgattcatgaatcgttacgtaccgaaattgaa
cgttcgttagaaaccctaactcctcgcgaagccgatgtcgttcgtttatattttggatta
ggcgaccaacatcctatgaccttagaagaaattggggaaacttttgatttaacccgcgaa
cgtgttcgtcaaattaaagaaaaagcaatccgaagattaaaacatacctctagaagcaaa
atcttaaaaacctaccttggttag
DBGET
integrated database retrieval system
