Flavobacterium columnare: FCOL_04845
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Entry
FCOL_04845 CDS
T01653
Name
(GenBank) ATP-dependent DNA helicase RecQ2
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fco
Flavobacterium columnare
Pathway
fco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCOL_04845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fco03019
]
FCOL_04845
03400 DNA repair and recombination proteins [BR:
fco03400
]
FCOL_04845
Enzymes [BR:
fco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCOL_04845
Messenger RNA biogenesis [BR:
fco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCOL_04845
DNA repair and recombination proteins [BR:
fco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FCOL_04845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
HTH_Cmi2_C
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AEW85800
UniProt:
G8X8G6
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All DBs
Position
1150599..1152491
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AA seq
630 aa
AA seq
DB search
MQKTLEILQKYWGYDSFRPVQDEVVQSVLEGHDTFALLPTGGGKSLCFQVPAMISGGLCL
VVSPLVALMKDQVGQLQKRGIKAIALTGGTHADELIQLLDNCQFGNYHFLYLSPERLEQD
WVLERIKSLPIHLIAVDEAHCVSQWGYDFRPSYLKINTLKKAFPKVPFIALTASATPEVQ
QDILLNLGLINPKIFKKSFSRDNLSYHVIKSEDKLYKIKQILLKNPEPSIIYVRNRKLCL
DYANQLNSLGFSATYYHGGLLPKDKEKNMESWMNESRLIMVATNAFGMGIDKPNVKTVIH
VNLPENLESYYQEAGRAGRAGQKAFAIMIASYNDIIHAQEQFVTVLPDVVFLKEIYKKLC
NYFQIPYGEGINEEFTFSLNRFCTHYNFPILKTFNALQFLDRQGIISLSNEQSEKVQLQF
IVESKEVIRYISFHPDEEAIITTILRNYPGIFEIQTNINTSFVAKQAFCKEEKVFNLLQK
LKEQNMVHLLIIQNESKITFLEVREDDRTINRIAKYLEKQNLTKKSQLAAVVAYVNDQNQ
CKSKLILTYFGEIGVADCGSCSYCLKKNKKIYNKEHLTEELLKILKTEKLSSREILEKIN
IEEKILFEILKEMLEYNMIELDHKNQFILK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaaacattagaaattcttcaaaaatattggggatatgatagttttagacctgtt
caagatgaggttgttcagtcagttctagagggtcatgatacgtttgcacttcttccaaca
ggaggaggcaagtcattgtgttttcaggttccagcaatgattagtggagggctgtgttta
gttgtgtctcctttggtagccttgatgaaagaccaggtggggcaacttcagaagagaggt
attaaggcaatagctttaacaggaggaactcatgcagatgagcttatacagctgttggat
aactgtcagtttggtaattatcattttttatatttatctccagagagattagaacaagat
tgggtattagaacgaattaaaagtttaccaattcatctaatagcagtagatgaagcacat
tgtgtttctcaatggggatacgattttagaccttcgtatttaaaaatcaatacattaaaa
aaagcttttcctaaagttccttttattgcgcttacagcatctgcaactcccgaagttcaa
caagatatattgctgaatttaggattgattaatcctaagatttttaaaaaatcgttttca
cgagataatttgagctaccatgttataaaatcagaagataaactttataaaatcaagcaa
attttactcaaaaacccagaaccttctatcatatatgttaggaataggaaattatgttta
gattatgcaaatcaattaaattctcttgggtttagtgcaacttattaccatggcggttta
ttgcctaaggataaggaaaaaaatatggaatcatggatgaatgaaagtcgtttgattatg
gttgcaacaaatgcttttgggatgggtattgataaacccaatgtaaagaccgtaatacat
gtaaaccttcctgaaaacctagaaagttattatcaagaagcaggcagggcgggtagagca
ggccaaaaggcttttgctattatgattgcgtcttataatgatattattcatgctcaagaa
cagtttgttactgttttgccagacgtagtttttttgaaagaaatttataagaaattgtgt
aattattttcaaattccctacggagaagggattaatgaagaatttacttttagtttaaat
cgtttttgtacacattataattttcctattttaaaaacctttaatgcgttacaatttttg
gatagacaaggaattatctcgctttcaaatgaacagtccgaaaaagtacaacttcagttt
atagtagaatcaaaagaagtaatacgttatataagttttcatcctgatgaagaagctatt
ataacaactattttaagaaattatccagggatttttgaaattcaaaccaatatcaatact
tcttttgtggcaaaacaggcgttttgtaaagaagaaaaggttttcaacttattgcaaaaa
ctgaaagaacaaaatatggttcatttattaattattcaaaatgaatctaaaataactttt
ttagaagtaagagaagatgatcgtacgataaatagaatagcaaaatatttagaaaaacaa
aatctaacaaagaaaagtcaattagcagcagttgtagcttatgtaaacgaccaaaaccaa
tgcaaaagtaaattgatacttacttatttcggggaaattggagttgcagactgcggaagt
tgttcctattgcttaaaaaaaaacaagaaaatctataacaaagaacatctgacagaagaa
ttacttaaaatattaaaaacagagaaattaagttctcgagaaatcttagaaaaaataaat
atagaagagaaaatcctttttgaaatcttaaaggaaatgttagagtataatatgatcgag
ttagatcataaaaatcaatttattcttaaataa
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