KEGG   Flavobacterium columnare: FCOL_06000
Entry
FCOL_06000        CDS       T01653                                 
Name
(GenBank) signal recognition particle protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
fco  Flavobacterium columnare
Pathway
fco02024  Quorum sensing
fco03060  Protein export
fco03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:fco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    FCOL_06000
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    FCOL_06000
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    FCOL_06000
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:fco02044]
    FCOL_06000
Enzymes [BR:fco01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     FCOL_06000
Secretion system [BR:fco02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   FCOL_06000
  Eukaryotic Sec-SRP protein
   FCOL_06000
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N AAA_22 CbiA Zeta_toxin AAA_33 cobW nSTAND3 CLP1_P AAA_24 AAA_31 APS_kinase ATPase AAA_17 TsaE ATP_bind_1 AAA_18 6PF2K DUF3294 NACHT KTI12 DO-GTPase1 ArsA_ATPase NPHP3_N
Other DBs
NCBI-ProteinID: AEW86025
UniProt: G8XB57
LinkDB
Position
complement(1393668..1395017)
AA seq 449 aa
MFNNLSEKLDKAFHILKGHGKITEVNVADTLKEVRRALLDADVNFKIAKDFTTRVKEKAL
GQDVLTTLQPGQLLVKIVKDELTELMGGDVQGINLSGSFSVILMSGLQGSGKTTFSGKLA
NFLKTKKNKKPLLVACDIYRPAAINQLHVVGEQIGVEVYSEPENKNAVEIAQNAIKYAKS
NGFTVVIVDTAGRLAVDEEMMTEIANVHKAITPNETLFVVDSMTGQDAVNTAKAFNDRLN
FDGVVLTKLDGDTRGGAAISIKTVVNKPIKFIGTGEKMDAIDVFYPERMADRILGMGDVV
SLVERAQAQYDEEEARKLQRKIAKNEFGFDDFLAQIQQVKKMGNMKDLVGMIPGASKALK
DVEIEDDAFKHIEAIIYSMTPGERSKPSLIDTKRKNRIAKGSGRKIEEVNQLLKQFDQMS
KMMKMMQGPGGKQLMKMMGGMKGGLPGMK
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgtttaataatttatcagagaagttagataaggcgtttcatatattaaaaggacacggt
aaaattacagaagtaaatgttgcagataccttaaaagaggtacgtcgcgcattacttgat
gctgatgttaactttaagattgctaaagattttacaaccagagtaaaagaaaaagcatta
ggacaagatgtattaacaaccttacaaccaggacagctattagttaaaatcgtaaaggat
gaattaacagagttaatgggaggtgacgtacaaggaattaatttatcaggaagtttctcg
gttattttaatgtctggtttacaaggttctggtaaaacaaccttttctggtaaattggct
aatttcttaaaaacaaagaaaaataaaaagcccttattagttgcttgtgacatctatcgc
ccagcagctattaaccagttacatgttgtaggagaacaaataggtgtagaagtatattct
gaaccagaaaataaaaatgcggttgaaattgcacaaaatgctatcaagtacgctaaatca
aatggttttacggttgttatagtcgatacagcaggacgtttagctgttgatgaggaaatg
atgactgaaattgctaatgttcataaagcaattacgcctaacgaaaccttatttgttgta
gactcaatgacgggtcaagatgcagtaaatactgcaaaagcatttaacgatcgtttaaat
tttgatggcgtagttcttactaaattagacggggatacacgcggaggtgctgctatatca
attaaaactgttgtcaataaacctattaagtttattggtacgggtgaaaaaatggatgcc
attgatgtgttttatccagaacgtatggcagaccgtattttaggaatgggagacgttgtg
tctttagtagaacgtgctcaagcacagtatgacgaagaagaggcacgtaaattacaacgc
aagatagccaaaaatgaatttgggtttgatgacttcttagctcaaatacaacaagttaaa
aaaatgggtaatatgaaagatctggtagggatgataccaggtgcaagtaaagctctaaag
gatgtagaaattgaagatgatgctttcaagcacattgaagctattatttattcaatgaca
ccaggagaaagaagtaaaccctcattaattgatacaaaacgtaagaacagaatagccaaa
ggatcaggtagaaaaatagaggaagtaaatcagttgttaaaacaatttgatcagatgagt
aagatgatgaaaatgatgcaaggaccaggaggtaagcaattaatgaaaatgatgggaggt
atgaaaggtgggcttccaggaatgaaatag

DBGET integrated database retrieval system