Flavobacterium columnare: FCOL_06395
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Entry
FCOL_06395 CDS
T01653
Symbol
trmE
Name
(GenBank) tRNA modification GTPase TrmE
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
fco
Flavobacterium columnare
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fco03016
]
FCOL_06395 (trmE)
Transfer RNA biogenesis [BR:
fco03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
FCOL_06395 (trmE)
Prokaryotic type
Methyltransferases
FCOL_06395 (trmE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
RsgA_GTPase
Dynamin_N
MMR_HSR1_Xtn
Roc
Arf
Gtr1_RagA
GTP_EFTU
Ras
ABC_tran
AAA
cobW
AAA_22
ABC_ATPase
Guanylate_kin
AAA_29
NOG1
AAA_24
AAA_18
AAA_16
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AEW86100
UniProt:
G8X4Q2
LinkDB
All DBs
Position
complement(1479182..1480570)
Genome browser
AA seq
462 aa
AA seq
DB search
MNLDTIVALATPSGAGAIAVIRISGKEAIVKAQQVFKSIKKKDLAKQKSHTLHLGHIVDG
DKILDQVLLSLFKGPNSYTGEDTVEISCHGSTFIQQQIIQLLLRKGARMAQAGEFTLRSF
LNGKMDLSQAEAVADLIASDNEASHQIAMQQMRGGFSNELAKLREELLNFASLIELELDF
AEEDVEFADRSQFIDLLNRIEFVLKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNAL
LNEERAIVSDIAGTTRDTIEDELVINGIGFRFIDTAGIRETKDVVESIGIQKTFEKIEQA
QVVLFLVDSSQLIVNSLDSLKNEIEQIKNKYPQKTLLTIFNKMDLMLTELMSNIKSQISN
CLFISAKQKIGIDELKNTLLSFVNTGALRNNETIITNTRHYDSLLKALEEIQKVQWGMQQ
GLPSDLMAIDIRQALYYFGEITGEVTNDELLGNIFANFCIGK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagacactattgtagcgcttgctactccatcaggagcgggagccatagctgta
atccgtatttcaggtaaagaggcaattgttaaagcacaacaagtttttaaatctattaaa
aagaaagacttagccaaacaaaaatcccatacgctacatttaggacatattgtagatgga
gataaaattctagatcaagtccttctttccttattcaaaggccccaactcctacacgggc
gaagacaccgtagaaatttcctgccacggctctacattcatacaacagcaaatcatccag
ctcctacttcgcaaaggcgctcgaatggcacaagcaggcgaatttactctgcgctctttc
ctaaacggaaaaatggacctttcacaagccgaagcggttgccgacttaattgcctcagac
aacgaagccagtcaccaaattgccatgcaacaaatgcgtggcggctttagcaacgaatta
gcaaaactacgcgaggaattattaaacttcgcctcattaatagaactcgaacttgatttt
gccgaagaagacgtcgaatttgccgatagaagtcagtttattgatttattaaaccgcatc
gaatttgttttaaaacgcttaatcgactcctttgctgtaggtaacgtgattaaaaacgga
atccccgtagccattgtaggcgaacctaatgtgggcaaatcgaccctattaaatgcccta
ttaaacgaagaacgcgccatagtatcagacattgccggtaccacacgcgataccatcgaa
gacgaactagtcatcaacggcataggctttcgttttatagacaccgcaggcatacgcgaa
acaaaagatgtcgtagaaagcataggaatccaaaaaacctttgaaaaaatcgaacaagcg
caagtggttctatttttagttgacagttcacagctaatagtcaacagtttagattcactt
aaaaatgaaatagaacaaattaaaaacaaataccctcaaaaaacgttactgacaattttc
aataaaatggatttgatgctaaccgaattaatgtcaaacatcaaatctcaaatttcaaat
tgtttattcatttctgcaaaacaaaaaataggtatcgatgagttaaaaaacaccctatta
tcctttgtaaacacaggtgccctgcgcaacaacgaaacgattataaccaatacccgtcat
tacgattcgttactcaaagccctagaagaaattcaaaaagtacaatggggcatgcaacaa
ggtttgccttcagatttgatggccatagatattcgccaagccctatactattttggagaa
attacaggtgaagtcactaacgatgagttgttaggcaatatctttgcaaacttttgtatt
ggcaagtaa
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