Flavobacterium columnare: FCOL_06860
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Entry
FCOL_06860 CDS
T01653
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fco
Flavobacterium columnare
Pathway
fco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCOL_06860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fco03019
]
FCOL_06860
03009 Ribosome biogenesis [BR:
fco03009
]
FCOL_06860
Enzymes [BR:
fco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCOL_06860
Messenger RNA biogenesis [BR:
fco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCOL_06860
Ribosome biogenesis [BR:
fco03009
]
Prokaryotic type
rRNA helicases
FCOL_06860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RRM_5
Cas3-like_C_2
RecG_N
TssR_C
Motif
Other DBs
NCBI-ProteinID:
AEW86193
UniProt:
G8X5G1
LinkDB
All DBs
Position
1599489..1601306
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AA seq
605 aa
AA seq
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MNKFEQLGLNESLVLAIKDLGFENPSEVQEKAIPLLLEQDTDIVALAQTGTGKTAAFGFP
LIQKINVEDKITQALILSPTRELCLQITNEIKLYSKYIKGLNTVAVYGGASINEQARDVK
RGAQVIVATPGRMQDMINRGMVNIKNISICVLDEADEMLNMGFYDDICSILADTPKDKNT
WLFSATMPTEVARIAKQFMHTPQEITVGHKNQGSTNVSHEFYLVNARDRYAALKRLADTN
PDIFSVIFCRTKRDTQAIAEKLIEDGYNAAALHGDLSQAQRDAVMKAFRGRQIQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGTSMVIITKSELRKISQIERI
IKTKFEERPIPSGIEICEIQLYHLANKIKDVEIDHEIDNYLPAIYDVLQDLTKEELIKKM
VSVEFNRFLSYYKKSRDLHQESSSSKTTTIPTEGAVRYFINIGARDGFEWMELKDFLKEK
LELGRDDVFKVDVKEGFSFFNTDAEHVDLVMNTLNGITLEGRRINVEISKNDGSSNNKRR
DHNSRGGGERRERRGEGGAPRGERRDGAKKSSDRRSSSSDDRSPKNERRPRRSDSSSSGS
RNRRS
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggtcttaatgaatcgctagtgctggcgattaaagatcta
ggatttgaaaatccctccgaagtacaagaaaaagcgattcctctattattagagcaagat
accgacattgttgcattggcgcaaactggtactggaaaaacagctgcatttggtttccct
cttattcaaaaaattaacgtagaagataaaataactcaagcattaatcttatctcctacg
cgtgaattatgtttgcaaatcacgaatgaaatcaaactttattctaaatacatcaaaggt
ttgaatacggtagccgtatatggtggagcaagtattaacgagcaggcaagggacgtaaaa
agaggagcgcaagttattgtggccactccaggacgtatgcaagatatgattaaccgcgga
atggttaacataaaaaacatttcgatttgtgtattggacgaagcagatgaaatgcttaac
atggggttctatgatgatatctgttctattttagcagatactccaaaggataaaaatact
tggttattttcggcaactatgcctactgaagtagcaagaattgctaaacaattcatgcat
actcctcaagaaattacagtaggtcataaaaatcaaggttcaacaaacgtttcgcatgag
ttttatttagttaatgcacgcgatcgttacgctgctctaaaacgtttagcagacactaac
cctgacattttctctgttattttttgtagaaccaaaagagatacgcaggcaattgccgaa
aaattaatcgaagatggttataacgcagcagctttacatggtgatttatcgcaagcacaa
cgtgatgctgttatgaaagcatttcgtggtcgccaaattcaaatgttagtggctactgac
gttgcagcacgtggtatagatgtagatgatgtaacacacgtaataaactatcagttacct
gatgaaattgaaacttacacacaccgttcgggtcgtacgggtcgtgctggaaaatcaggt
acatctatggttattattacaaaaagtgaattacgcaaaatcagtcagattgagcgaatc
attaaaactaaatttgaggaaagacctatccctagtggaattgaaatctgcgaaattcag
ttataccacttagcaaacaaaataaaagacgtagaaatagatcatgaaattgataattac
ctacctgctatttatgatgttcttcaagatttaacaaaagaagaattaatcaagaaaatg
gtatcggttgaattcaatcgcttcttatcttactacaaaaaatcacgtgatttacaccaa
gaatcttctagtagtaaaacaacaactattccaacagaaggtgctgttcgctatttcatt
aacattggagctcgtgatggttttgaatggatggaattaaaagatttcttaaaagaaaaa
ttagaactaggccgtgatgatgtttttaaagtagatgtaaaagaaggtttttctttcttc
aacactgatgcagagcacgtagatttagttatgaatactttaaacggtattaccttagaa
ggtagacgtataaacgtagaaatatctaaaaacgatggttcttccaacaacaaacgtcgc
gaccataactctagaggtggtggtgaacgtagagaaagacgcggtgaaggtggtgctcct
agaggggaaagacgtgatggcgctaaaaaatcatccgatagaagaagctcttcttctgac
gatagaagccctaaaaatgaaagacgtcctcgtcgttccgattcttcttcatcaggcagc
agaaaccgtagaagctaa
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