Flavobacterium columnare: FCOL_12095
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Entry
FCOL_12095 CDS
T01653
Name
(GenBank) exonuclease, RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fco
Flavobacterium columnare
Pathway
fco03030
DNA replication
fco03430
Mismatch repair
fco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCOL_12095
03430 Mismatch repair
FCOL_12095
03440 Homologous recombination
FCOL_12095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fco03032
]
FCOL_12095
03400 DNA repair and recombination proteins [BR:
fco03400
]
FCOL_12095
Enzymes [BR:
fco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FCOL_12095
DNA replication proteins [BR:
fco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FCOL_12095
DNA repair and recombination proteins [BR:
fco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FCOL_12095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
Rv2179c-like
DNA_pol_B_exo1
DUF3801
Motif
Other DBs
NCBI-ProteinID:
AEW87220
UniProt:
G8X8Y7
LinkDB
All DBs
Position
complement(2851868..2852641)
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AA seq
257 aa
AA seq
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MELKLNRPICFFDLETTGTDISKDRIVEISIIKVFPNGNKESKTWLVNPTIPIPLQAAAI
HGISDAKVANEPTFAELANQVHNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMKNRV
SVDVQTIFHKKEERTLSAAYRFYCNQTLNNAHSAEADTNATYEILKAQLDRYPDLENDMK
VLSEYTTRKKSVDFAGFIALDDKGQEIFAFGKHKGALVEEVFDKEPGYFGWIQNADFPLY
TKKVLTGIKLRKLNTKQ
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggagttaaaattaaatcgtccgatttgtttttttgacttagaaactacagggacagat
atttcaaaagatcgaattgttgaaatttcaataataaaagtttttccaaatggaaacaaa
gaaagtaaaacatggttggtaaatcctaccattcctattcctttacaagcagctgctatt
cacggaatttcagatgcaaaagtagccaatgaacccacctttgcagagttagctaatcaa
gtgcacaatatgattaaagattctgatttagcgggatttaattccgatcgttttgatatt
cccctattggcagaagaattattacgtgcaggggttgattttgatatgaaaaatagagtt
tctgtagacgtgcagactatctttcataaaaaagaagagcgcacattaagtgcagcttat
aggttttactgcaaccaaacactgaataatgcccacagtgcagaagcagatacaaatgca
acgtatgagattttaaaagcacaattagatcgttatcccgatttggaaaatgatatgaaa
gtcttatcagagtatacaactcgtaaaaaatccgttgattttgctggatttatagcttta
gatgataaagggcaagaaatttttgcttttggtaaacataaaggagctctagtagaggag
gtctttgataaagagccagggtattttggatggattcaaaatgcggattttcctttgtat
actaaaaaagtattaacaggtattaaattaagaaaactaaacacaaaacagtag
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