Flavobacterium columnare: FCOL_12765
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Entry
FCOL_12765 CDS
T01653
Name
(GenBank) ATP-dependent DNA helicase RecQ1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fco
Flavobacterium columnare
Pathway
fco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCOL_12765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fco03019
]
FCOL_12765
03400 DNA repair and recombination proteins [BR:
fco03400
]
FCOL_12765
Enzymes [BR:
fco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCOL_12765
Messenger RNA biogenesis [BR:
fco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCOL_12765
DNA repair and recombination proteins [BR:
fco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FCOL_12765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AEW87348
UniProt:
G8XAP2
LinkDB
All DBs
Position
2991687..2993882
Genome browser
AA seq
731 aa
AA seq
DB search
MSSDPIDLHKELKKYFGFSQFKGLQEQVVKSIVSRENTFVIMPTGGGKSLCYQLPALIQE
GVAIVVSPLIALMKNQVDALRSLGSGDAIAHVLNSSLNKTEINQVKKDIASGFTKLLYVA
PESLTKEEYIDFLKEHKISFVAIDEAHCISEWGHDFRPEYRNLRNIIRALGEIPIIGLTA
TATPKVQEDILKNLEMSDANVFKASFNRPNLFYEVRTKTKNVEADIIRFIKQHKGKSGVI
YCLSRKKVEEIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMAGKPIAEQE
VGFALLQEVVSYAETSMSRRKFLLHYFGETFDNETGEGGDMDDNMRNPKKKTEAKDNVVK
LLEAIRDTKEIYKAKEIILALIGKLNAVIKAHKTDAQPFFGIGKDQDEKYWMALIRQVMV
DGYIRKDIETYGVLKITDKGYAFLNTPTSFMMTEDHEFDDNEDDTVLTAAKSSGTTDEVL
MAMLVDLRKKVGKKEGVPPYVVFQEFSLEDMALKYPITIAELSNIQGVGEGKAKKYGKAF
VDLIAKYVDENDIIRPDDLVVKSTGANSGLKLYIIQNIDRKLPLDDIAKAKGLDMDALLK
EMEQIVYSGTKLNINYWIDEILDEDQQQEIHDYFMDSESDKIQDALNEFDGDYDTEELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgagttctgacccaattgatttacacaaagaattaaaaaagtattttggatttagccaa
tttaaaggactacaagaacaagtagtaaagagtattgtatctagagagaatacttttgtt
ataatgcccacaggaggtgggaaatcgttatgttatcagttacctgcgctgattcaggag
ggcgtggctatcgtcgtttcgcctctgattgcgttaatgaaaaatcaagtagacgctctt
agaagtttaggctctggagatgcaattgcacatgttcttaattcttcattaaataaaaca
gaaataaaccaagttaagaaagatatagcatctggctttacgaaattattgtatgtagcc
cctgaatctttaacaaaagaagaatatattgattttttgaaagaacataaaatttctttt
gttgctattgatgaagcccattgtatttcagaatggggacatgattttagacctgaatat
cgaaatttaagaaatataattagagctctgggtgaaattccaattattggattaacggca
acagctacaccaaaagttcaagaagacatactaaaaaatctagaaatgtctgacgcaaat
gtattcaaggcatcgttcaatcgtcctaatttattttatgaagtacgaacaaaaactaaa
aatgtagaagcagatattattcgttttataaaacaacataaagggaagtcaggggttatt
tattgtctttcgcgcaaaaaagtagaagagatagcggaagttctaaaagtcaatggtatt
tcggcagtgccttatcatgcggggcttgatgctaaaactagagccaaacatcaagatatg
ttcctgatggaagaggtagatgtggtagtagctaccattgcttttggtatgggaattgat
aaacccgatgtgcgatttgtaattcatcatgatatacctaaatctttagaaagttattat
caggaaacaggaagagcaggacgtgatgggggagaagggcattgtttggcatactattca
tacaaggatgttgagaaattagagaagtttatggcaggaaaacccatagcagaacaagaa
gtaggttttgctttgttacaagaggttgtttcttatgccgaaacctctatgtcgcgtcgt
aaatttttattgcattattttggagaaacgtttgataatgaaacgggagaagggggagat
atggatgacaatatgcgtaatcctaaaaagaaaacagaagccaaagataatgtagttaaa
ttgttagaggctatacgagatacaaaagaaatttataaagcaaaagaaattattttagct
ttaataggtaaattaaatgccgtaattaaagcacataagacagatgcccaaccgtttttt
ggaataggtaaagatcaagacgaaaaatattggatggcactgatccgtcaagtaatggtt
gatggttacattcgtaaagatattgaaacctatggggttttaaaaataacggataaaggc
tatgcgttcttaaatacgccaacatcttttatgatgacagaagatcatgaatttgatgat
aatgaagacgatactgtactaactgctgctaaatcttcaggaacaacagatgaggttcta
atggctatgttagttgatttgcgtaaaaaagtaggtaaaaaagaaggagtgccaccttat
gtcgtttttcaagagttttcattagaagatatggctttaaaataccctatcacaattgct
gaactaagcaatattcaaggtgtaggagaaggaaaagctaaaaaatatggaaaagcattt
gtagatcttatagccaaatatgttgacgaaaatgatattatacgacctgatgatttagta
gtcaagtctactggagctaattcaggattaaagctttatatcattcaaaatatagataga
aaactccctttagatgatattgcaaaagccaaaggattagatatggatgccttattaaaa
gaaatggagcaaattgtttactcaggtactaagttaaatattaattattggatagatgaa
attttagatgaagatcaacagcaagagatccatgattattttatggattcagaatcagat
aaaattcaggatgctttaaatgaatttgatggagattacgacacagaggaactgcgactt
atgcgaattaagtttattagtgaagtagcaaattaa
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