Fructilactobacillus carniphilus: M3M37_00575
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Entry
M3M37_00575 CDS
T08865
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fcp
Fructilactobacillus carniphilus
Pathway
fcp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M3M37_00575 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcp03021
]
M3M37_00575 (rpoC)
03400 DNA repair and recombination proteins [BR:
fcp03400
]
M3M37_00575 (rpoC)
Enzymes [BR:
fcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M3M37_00575 (rpoC)
Transcription machinery [BR:
fcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M3M37_00575 (rpoC)
DNA repair and recombination proteins [BR:
fcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M3M37_00575 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
USS90754
LinkDB
All DBs
Position
118700..122344
Genome browser
AA seq
1214 aa
AA seq
DB search
MVDVNKFKSMQVGLAAPETIRSWSFGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWKC
ACGKYKGIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVTHIWYYKGIPSRMGLVLDM
SPRSLEEVIYFAAYVVTDPGNTPMEKKQLLTEQEYRDKKREYGTRFEAKIGAEAIRTLLA
DVDLEKEVAELKDELKSATGQKRTRAIRRLDILEAFLTSGNQLTWMVMDAIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKLSQMGLPVS
MALELFKPFIMHELVERGLASNVKNAKREIERKDDVVFDVLPDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGNSMRLHPLVCAAYNADFDGDQMAIHVPLSEEAQAESRLLMAAAGHIL
APKDGKPVVAPSQDMVIGNYYLTMEEPNREGEGMIFNDPDEVELAYRDGLVHWHSRIGIK
AAAYPNKPFTDDQQDKIMVTSVGKVLFNQILPKDFTYLNEPTDTNLHGYVPDEYFLEPGE
DIHEHIANAELVRPFKKGFLSDIIAEVYDQYKVTETSELLDRIKDLGNDESTKSGLTVGM
SDIMDLHEKPKVVAAAHKKVDTITKQFRRGLITDQERYERVVNVWNEARDEIQDQLMKNF
DPENPIFMMSDSGARGNISNFTQLAGMRGLMASPDGKIMELPITSNFREGMSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREKDCGTDRGLTVTAITEGNEMIEPLY
DRILGRNAMKTVTNPQTGEVIVDRNEMIDDKKAQAIVDAGIEAVEIRSAFTCNTPHGVCE
RCYGQNLATGDEVEVGEAVGTVAAQSIGEPGTQLTLRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGKSTISEVTGVVELIEEDPAEGVKEITIQGKADTRKYKVPLTARMRVAEGDTV
RRGEALNEGSIDPKELLKIRDTLSTETYLLTAVQEVYRRQGVEVNDKHAEIMVRQMLRKV
RVMDPGDTDILPGTLIDIDDFKERNRDAVMTGKVPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKVDPLIGLKENVIIGKLLPAGTGVHEYEDIEPEELGQTADQGVTA
PSDQTTSADGDDAE
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgtgaacaaatttaagagcatgcaagttggtttagcagccccagaaacgatc
cgcagttggtcgtttggagaagttaagaagccagaaaccattaactaccggacgttgaaa
ccggaaaaagacggtttattcgacgaacggatctttggaccaaccaaggactggaaatgt
gcctgtggaaagtacaaagggatccggtacaagggaatcgtctgtgatcgttgtggtgta
gaagttacccgtgctaaggtccggcgggaacggatgggccacattgaattagcagctccg
gttacccacatttggtactacaagggaattccgagccggatgggcttggtcttagacatg
agtccgcggtcacttgaagaagttatttactttgccgcctacgttgtaaccgatcctggt
aacacgcccatggaaaagaagcaactcttaacggaacaagaataccgggataaaaaacgg
gaatacggaacgcgctttgaagccaaaattggggccgaagccatccggacgttgttagct
gacgttgatctcgaaaaggaagttgctgaactcaaagacgaattgaagtctgcgaccgga
caaaaacggacccgggccattcggcggttagacattttggaagcctttctgacttctgga
aaccaactaacttggatggtcatggatgccattccagtgatgccacctgacttacggccc
atggtacaactagaagggggtcggtttgcgacctctgacttaaacgatttgtaccggcgg
gtaatcaaccggaacaaccggttgaaacgtctgctggatttgcatgctcccggcattatc
gtgcaaaacgaaaagcggatgttgcaagaagctgtcgatgccctaatcgataacggacgg
cgtggtcgtccggttgccggtccaggaaaccggccgttgaagtccctttcccaccttttg
aaggggaaacaagggcggttccgtcagaacctgcttgggaaacgggtcgactactctggt
cgttccgttatcgacgtgggtccatggttgaagttgagccaaatgggacttcccgtttct
atggcccttgaactgttcaaaccattcatcatgcacgaattggtagaacgcgggttggct
tccaacgtgaagaatgctaaacgtgaaattgaacgcaaggacgacgtggtctttgacgtc
ttaccagatgtcatcaaggaacacccagtgctgttgaaccgggccccaaccttgcaccgg
ttaggaattcaagcctttgaacccgtgctggttagtgggaactcgatgcggttgcatccc
ctagtttgtgccgcttacaacgccgactttgatggagaccagatggccatccacgtgccg
ctgtcagaagaagcacaagcagaatcacggctcttgatggccgctgccgggcacattttg
gcgcctaaagacgggaaaccagttgtggctccatcccaagatatggtgattgggaactac
tacctcaccatggaagaacccaaccgtgaaggggaaggcatgatctttaacgatcctgat
gaagtggaattagcttatcgggacgggctagtgcactggcacagtcgaattgggattaaa
gcggctgcttacccaaacaagccgtttacggatgaccaacaagataagattatggtaact
tcggttgggaaagttctcttcaaccaaatcctgccgaaggactttacctacttgaacgaa
ccaaccgatactaacttacacggttacgttccagacgaatacttcttggaaccgggcgaa
gacattcatgaacatattgccaatgccgaattggttcgtccctttaagaagggcttctta
tcggatatcattgctgaagtttacgatcaatacaaggtaacggaaacttccgagctcttg
gaccggatcaaggaccttggtaacgatgaatcaacgaagtctggattaacggtcggaatg
tctgacatcatggacctccacgaaaagccgaaggttgtggcagctgcccacaagaaggtg
gacaccattaccaagcaattccggcgtggtttgattactgatcaagaacgttacgaacgg
gttgtgaacgtttggaacgaagctcgtgatgaaattcaagaccaattgatgaagaatttc
gaccccgaaaaccccatctttatgatgagtgattctggagcccggggtaacatttctaac
tttacgcagttagctggaatgcggggcttgatggcttctcctgatggtaaaatcatggaa
ctgcccatcacttcgaacttccgggaaggaatgtccgttttggaaatgttcatttcgacc
cacggtgctcggaaagggatgaccgatacggccttgaagactgccaactctggttactta
acccggcggttagttgacgtggcgcaagacgttatcattcgggaaaaggattgtggaact
gatcgtggtttgacggttactgccattacggaaggtaacgaaatgatcgaaccactttac
gaccgaatcttaggccgaaatgccatgaagaccgtgacgaacccacaaactggtgaagta
attgtggatcggaacgaaatgattgacgacaagaaggcccaagccatcgtggacgctggg
attgaagccgtcgaaattcgttcggccttcacttgcaacacgcctcacggggtttgtgaa
cgttgttacggtcaaaacttggctactggtgacgaagtggaagttggagaagcagtcgga
acggttgctgctcaatctatcggggaacccggaacgcagttaacgttacggactttccat
accggtggggttgcaagtaacaccgatatcacccagggacttccccgggtgcaagaaatc
tttgaagcccggaatccaaaaggtaagtcaaccatcagtgaagttactggggtcgttgaa
ttaatcgaagaggatccggctgaaggggttaaggaaatcaccatccaaggaaaagccgat
accagaaagtacaaggttccattgacagctcggatgcgggttgctgaaggtgacacggtt
cgccgtggggaagccttgaatgaaggttcgattgatccaaaggaattgctgaagatcaga
gatactctgtctacggaaacctacctgttaacggcggtccaagaagtttaccggcgtcaa
ggggtggaagtgaacgataagcatgccgaaatcatggttcggcaaatgttacgaaaagtt
cgggtcatggatccgggtgacactgacatcttgccaggaactttgattgacatcgatgac
ttcaaggaacggaaccgggatgccgttatgactggaaaggtgccagctacggctcgtccg
gtgctcctcggaatcacgaaggctgccctcgaaacgaacagtttcttatcagctgcttcc
ttccaagaaacgacgcgggttctgaccgatgctgctattcgcggtaaggttgatccgttg
attggattgaaagaaaacgtaattattgggaagttgttaccagctggaacgggtgttcat
gaatatgaagacatcgaaccagaagaactgggtcaaaccgctgatcaaggagtgactgct
ccttctgaccagacgaccagtgctgatggcgacgacgctgaataa
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