Fructilactobacillus carniphilus: M3M37_01630
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Entry
M3M37_01630 CDS
T08865
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fcp
Fructilactobacillus carniphilus
Pathway
fcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M37_01630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcp03019
]
M3M37_01630
Messenger RNA biogenesis [BR:
fcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M3M37_01630
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
USS90934
UniProt:
A0ABY5BWR0
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Position
296195..297910
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AA seq
571 aa
AA seq
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MKKNVKVIPLGGVREEGKDLFAVEINGSSIFILDCGSKFPLDEMLGVDYVIPDFTYLQEN
ADKIVGVFLTSGQLDSIGSLPYFLSEFDVPVFGTELTIKLAEKLVAKHKKAKKFHDFHVI
SDSSEIVFDDGTVSFFGVTHSIPDAVGIAIQTSLGSIVYTGDFKFDQTVPAEYQADYAAI
AAVGKHKVLALLCDSRNAEDQGTVAEEQKVRDYLVDVFDFQASRIIVTCLADHLLRLQEI
IDAAAATDRRIFFANDKSKAILDTALELGKVSNPEPHLFVKSEKELNQLDPEQVIVLHIG
QPGEAMRSLEDMASQRNPRVQIQSGDLVLLATDPFRSMDNEWAKTRDLIYQDDATVASIG
ENLNLASDATRSDIQMMTSLIHPKYFIPVQGEYHQLQAAADAVFATGFPADRVLMPAKGD
VIEFDEKGMQLAQAVSASDTMIDGIGVGDIGNIVLRDRSVLSQDGVFIAVVTIDRKKKLI
VEKPKVTSRGFIYAQSNQALLNEAADVVEKTVRSNLDNKEFDWGFLKQDVREKLSSFLYK
KTDRRPVILPVIMEVNQHHRRSKNAKNKKKK
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaacgttaaagttattccccttggtggggtccgcgaagaagggaaagactta
tttgcggttgaaattaatggaagtagcatttttattttagactgtggctctaaatttcca
ctcgacgaaatgctaggtgtagattacgttattcctgatttcacctatctacaggaaaat
gccgataagattgtgggcgtttttctaacttcgggacaattagattcgattggatcctta
ccatactttttaagtgaatttgatgtacccgtatttggaaccgaactgaccattaaattg
gcagaaaagctggttgccaagcacaaaaaggcgaagaaatttcatgatttccacgttatt
agtgatagtagtgaaatcgtgtttgatgacggaacggtcagtttctttggcgtaacccac
tccattccagacgcagttggaatcgcgattcaaacaagcctcggaagtattgtctacact
ggggactttaagtttgatcaaaccgtgcctgcggaataccaagctgactatgctgccatt
gcagcggtgggcaagcataaggtattagcgctcttgtgtgattctcgcaacgctgaggat
caggggacagttgctgaagagcagaaggttcgggattacttagttgacgtttttgacttt
caagccagccggattattgtgacttgtctggcagatcatctgctccggctccaagaaatc
attgatgccgcggcagctactgatcggcgaattttctttgctaacgataagtccaaggca
atcttagatacggcgctagaactaggaaaagtaagcaatccagaaccacacttgttcgtt
aaatcagaaaaagaattaaaccagctggatccagaacaagtgattgttcttcacatcggg
caaccgggggaagcaatgcgctcgttagaggacatggctagccaacggaaccctcgggtt
cagattcaaagtggcgatttagtgttactggcaaccgatccattccgttcgatggataat
gaatgggcaaagacccgggatttaatttaccaagatgatgccacggttgctagcattgga
gagaatctcaacctagctagtgatgctacgcgtagcgacattcaaatgatgactagtttg
attcatccgaaatactttattcccgtccaaggggaataccaccaattacaggcagcggcg
gatgcagtgtttgccactggttttccggcggatcgcgttttaatgcccgctaagggtgac
gtcattgagtttgacgaaaagggcatgcaattagcacaagccgtctctgcttctgatacg
atgattgatggaattggggttggtgacattggtaacattgtcttacgggatcggagcgtc
ttgtcccaagatggagtttttattgccgtagtaaccattgaccgcaagaagaagctaatt
gtggaaaagcccaaggtaacatcacgaggctttatctacgctcaatctaaccaagcgctt
ctaaacgaagcagccgacgtcgttgaaaaaacggtgcgcagcaacttagataacaaggaa
tttgactggggctttttgaaacaagatgtccgggagaagttaagttctttcctttataag
aagacggatcggcgcccagtaattttaccggtgatcatggaagttaaccaacaccaccgt
cggtcaaagaatgctaaaaacaaaaagaaaaaataa
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