Fructilactobacillus carniphilus: M3M37_04120
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Entry
M3M37_04120 CDS
T08865
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fcp
Fructilactobacillus carniphilus
Pathway
fcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M37_04120 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcp03019
]
M3M37_04120 (rnr)
03016 Transfer RNA biogenesis [BR:
fcp03016
]
M3M37_04120 (rnr)
Enzymes [BR:
fcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M3M37_04120 (rnr)
Messenger RNA biogenesis [BR:
fcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M3M37_04120 (rnr)
Transfer RNA biogenesis [BR:
fcp03016
]
Prokaryotic type
tRNA degradation factors
M3M37_04120 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
S1CSD-TOTE-2
Nucleolin_bd
Motif
Other DBs
NCBI-ProteinID:
USS90049
UniProt:
A0ABY5BU70
LinkDB
All DBs
Position
complement(804083..806437)
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AA seq
784 aa
AA seq
DB search
MQDNKLKQEIADLLSSHANEQFDVEKIADALRYHGSAAFKLIVQELAELERDRVVVVTND
GNFKINPSELSHEGVFHSNPKGFGFVAYDEQLPDAFIAPDDTMKAMNLDKVQMQITKAAQ
KNSDRGPQGKVMEIMEHHYDHVVGEFVKTNNDLGYLGQVKLRDKKLTGMKFYVADAGIHP
TPGEVVTADITEYPNAKHPDYMVGVAKQVIGSVDDPGIDILQIVYANDVPSEFPTDVLEA
ADEIPDHVLPEETKGREDITDQDLVTIDAEESKDLDDAVTAWKLPNGNYHLGVHIADVSH
YVKPGSRLDEEAYTRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEINPQGR
VVKSRIHPSVMKSTARMTYNAVNEIIENHDPETRAHYAGLVPMFETMNELHQILYKARRR
RGAIDFADDEAKIIVDEAGHPIDIQVRTRGTAERLIESFMLAANETVAETYHKAKVPFIY
RIHENPDPTKVKDFFEFLTAFGINVKADPDHLQPKTLQNILTKVEGQPEEAVVSVMLLRS
MQQAKYNEKCVGHFGLGAKYYTHFTSPIRRYPDMFIHRLIHYYEDNGINDTTKKTYADVV
GDVAVHASETERRAVDTERDVDAMMKAEYMSNKIGEEFDGVVSSVLKFGAFIELPNTVEG
LVHISRMTDDYYEYVEKYLALVGRNTKRTFKIGQDVRVKCVGVDVDQSAVDFEIVNPEET
PTSDLLPKRAQHNNSKRRYNNNSRRPGNHNGSNQNRNHNQNGGNKPAGQRATDHKHQFTI
QKRK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagataacaaactaaaacaagaaatcgccgatcttttaagttcgcatgcaaacgaa
cagttcgacgtggaaaaaattgcggatgccctccgctaccacggctcggccgcctttaaa
ctaattgtgcaagaactagccgagttggaacgggaccgagtagtcgtagttactaacgac
ggtaactttaagattaacccgagtgaactgtcccacgaaggggtctttcactctaatccg
aaaggctttgggttcgttgcctatgacgaacaactccccgatgcctttattgcacccgat
gacaccatgaaagccatgaacctggataaggtgcagatgcagattacgaaggccgcccag
aagaactctgaccgggggccccaaggaaaagtcatggaaatcatggaacatcactacgac
cacgtggtgggggaattcgtgaagaccaacaatgacctggggtacctggggcaggttaag
cttcgcgataaaaagttgaccggtatgaagttctacgttgctgacgctgggattcaccca
acgcccggtgaagtcgtgacggccgatattaccgaatacccgaacgctaagcacccagac
tacatggttggggtggcaaagcaggtcatcggaagtgttgatgatccggggattgatatc
ctccaaatcgtgtacgcgaacgacgttccctccgaatttccgaccgacgtcttagaggcc
gcggatgagattccagaccacgttcttcctgaagaaaccaagggacgtgaggacataact
gatcaagacctggtgacgattgatgcggaagaatccaaggacttggatgacgccgtgacc
gcttggaagttacccaacggaaactaccatttgggagttcacattgcggacgttagtcac
tacgtgaagcccggcagccgcttagacgaagaggcttatacccggggtacgtctgtttat
ctgaccgaccgggtaattccaatgttaccgcgacggttatcaaacggaatctgttcgttg
aacgaaggagaattgcggctctgcatgagttgtgagatggaaatcaatccgcagggacgc
gtcgtgaaatcccggattcatccgagtgtgatgaagtcgactgcccggatgacgtataac
gccgttaacgaaatcattgaaaatcatgatcccgaaacccgcgcgcactacgcgggattg
gttcccatgtttgaaaccatgaacgaactgcaccagattctgtacaaagcccggcgtcgg
cggggagccattgactttgctgatgacgaagctaagatcatcgtggacgaagccggccac
ccaattgacattcaggtgcggacccggggaacggccgaacgcttgattgaatcgttcatg
ttggctgctaatgaaacggttgccgaaacttaccacaaggcgaaggttccgttcatctac
cggattcacgaaaatccagatccaactaaagtgaaggacttctttgaatttctaactgcc
tttggaattaacgtcaaagccgatcccgatcacttacaacccaagaccttgcaaaacatt
ttgacgaaggtcgaaggccaaccggaagaagctgtagtttccgtaatgctgttgcggagc
atgcaacaagccaagtataacgaaaaatgtgttggtcacttcggactgggcgccaagtac
tacacgcactttacttcccccatccggcggtaccctgacatgtttatccaccggctcatt
cattattacgaagacaacggaattaatgacaccacgaagaaaacctatgctgatgtagta
ggggacgtggcagtccatgcttctgaaaccgaacgccgggctgtggatacggaacgggat
gtcgacgcgatgatgaaggctgaatacatgagtaataagattggcgaagaatttgacgga
gtggttagttccgtgttgaagttcggggcctttattgaactccccaacacggttgaaggc
ctcgtgcacattagccggatgacggatgattactacgaatacgtggaaaagtacctagcg
ttagtcggccgcaacacgaagcggacctttaagatcggacaagacgtccgcgtgaagtgt
gtgggcgtggacgttgaccaaagcgcggtggacttcgaaattgtgaatccggaagaaacg
ccaactagtgatttgttacccaagcgagctcagcacaataactctaagcggcggtataac
aataatagtcggcggccggggaaccacaacggttccaatcaaaaccggaatcacaaccag
aacggtgggaacaaaccagccggacaacgcgccaccgaccacaaacatcaatttacgatt
cagaaacgaaaataa
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