Flavobacterium crocinum: HYN56_03035
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Entry
HYN56_03035 CDS
T06596
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03410
Base excision repair
fcr03430
Mismatch repair
fcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HYN56_03035 (recJ)
03430 Mismatch repair
HYN56_03035 (recJ)
03440 Homologous recombination
HYN56_03035 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcr03400
]
HYN56_03035 (recJ)
DNA repair and recombination proteins [BR:
fcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HYN56_03035 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HYN56_03035 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYN56_03035 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
LsmAD
Motif
Other DBs
NCBI-ProteinID:
AWK03248
UniProt:
A0A2S1YGV4
LinkDB
All DBs
Position
627454..629157
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AA seq
567 aa
AA seq
DB search
MRWTLKPKPAEDKIKRLAEALNVEDFVATLLIQRGIETFEDAKNFFRPSLEHLHDPYLMK
DMDKAVARIELAIENQENILVFGDYDVDGTTAVSLVSSYLKSHYPHIATYIPDRYDEGYG
ISYKGIDYADDNGISLIIALDCGIKSIDHIAYAKAKNIDFIICDHHRPGEFLPDAIAVLD
PKREDCSYPYDELCGCGVGFKLIQALGQNRNETIEDLVPYLDLVATAIAADIVPITGENR
VLAYFGLKVINSEPRPGIKALTHQVKKKVLDITDVVFIISPRINAAGRIKHGNHAVELLT
EFDFEQAQQFASEIEQYNADRKDLDKKITKEAFQQILQNNEEERFSTVVFQEDWHKGVIG
IVASRLIETYYRPTLVFTKSGDKYAASARSVKGFDVYNALDACSEHLEQFGGHMYAAGMT
LKAENYQLFKEAFEKCVQETIQPEMRTPEIEIDAEINFSDITPKLIRILKQFEPFGPQNM
TPVFMTKNVKDTGYAKTLGAEEEHLRLFAKQYNSDGIAAIGFGLGKKLNITQNQNLFQLA
YTIAENEWNGTISTQLMLKDIRTNGRD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggaccttaaaaccaaaacctgctgaagataaaatcaaacgtttggcagaagct
ttaaatgttgaagattttgtagcaacacttttgattcagcgcggcattgaaacttttgaa
gatgccaaaaatttctttcgtccatctttagaacatctgcacgatccatatttgatgaaa
gatatggacaaagcagtagcacgaatcgaattggcaatcgaaaatcaggaaaatattttg
gttttcggtgattatgatgtggatggaacaactgctgtttctttggtttcttcttattta
aaatcacattatcctcatattgccacttatattcctgatcgttacgatgaaggttacgga
atatcctacaaaggaattgactacgcagacgacaacggaatttccttaattattgctttg
gactgcggtatcaaatcgattgatcatatcgcttacgcgaaagcgaaaaacatcgatttt
attatctgcgaccaccacagaccaggagaatttctacctgatgcaattgccgttttagat
ccgaaaagagaagactgctcctacccttacgacgaattatgtggttgtggcgttggcttt
aaattgattcaggctttaggtcaaaatcgaaatgaaactattgaagatttagttccgtat
ttggatttagtcgctacagcaattgcagcagatattgttccgataacaggcgaaaatcga
gttttggcttatttcggattgaaagtcatcaacagcgaaccaagaccaggaattaaagct
ttgactcatcaagtaaaaaagaaagttttagatattacggatgttgtttttattatttct
cccagaattaatgctgcgggaagaatcaaacacggaaatcacgccgttgaacttttaacc
gaatttgattttgaacaagcacaacaattcgcttcagaaattgaacaatacaatgctgac
cgaaaagatttagacaaaaaaatcaccaaagaagcttttcagcagattttgcaaaacaat
gaagaagaacgtttttcgacagttgtttttcaggaagactggcacaaaggtgttatcgga
attgtggcttcaagattaatcgaaacctattatcgtccgactttggtttttactaaaagc
ggcgacaaatatgctgcttctgcccgatctgtaaaaggatttgatgtttacaatgcactc
gatgcatgttcagaacatttggaacaatttggaggacatatgtatgccgcaggaatgact
ttaaaagccgaaaattatcagctttttaaagaagcttttgagaaatgcgttcaagaaacc
attcaacctgaaatgcgtactccggaaatcgaaattgatgccgaaataaatttttctgat
ataacaccaaaactgattcggattttaaagcaatttgaaccttttggccctcaaaatatg
acccccgtttttatgactaagaatgtaaaagatactggttatgctaaaactctaggtgca
gaagaagaacatttaagactattcgcaaaacaatataattccgacggaattgccgcaatt
ggctttggactcggaaaaaaactaaacataacacaaaatcaaaatctgtttcaattggct
tacaccattgccgaaaatgaatggaacggaactatttcaacacagcttatgctgaaagac
attagaacaaatggaagagattaa
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