Flavobacterium crocinum: HYN56_10120
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Entry
HYN56_10120 CDS
T06596
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03420
Nucleotide excision repair
fcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYN56_10120
03430 Mismatch repair
HYN56_10120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcr03400
]
HYN56_10120
Enzymes [BR:
fcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN56_10120
DNA repair and recombination proteins [BR:
fcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYN56_10120
MMR (mismatch excision repair)
Other MMR factors
HYN56_10120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWK04565
UniProt:
A0A2S1YKG8
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All DBs
Position
2200483..2202360
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AA seq
625 aa
AA seq
DB search
MIAENNDIDLQIDEDIFNCLNPISLKSFFLFAGAGSGKTSTLVNVLTKFKETFGNEYKFR
NRKIAIITYTNAAADEINHRLSYDSIFEVSTIHSFCWELIKNFTADIKIWIENDAKESIV
DLEDKLSRARDPNNKTAISNRKKLDSKNKRLLALPTINKFVYNPNGDNYSKASVNHSEVI
SIACYFLVSKNLFKQVLINKYPIVLIDESQDTKKDLIEALFKIQSEYKESFSLGLFGDTM
QRIYSDGKEKLGEDLPEDWLEPAKQMNHRSKSRIIELNNKIRKEIDGQKQLARVEKSGGT
VRFFIVPRGLEKMTVEKKIKESMIEFAEDEKWNDDSSIKTLTLEHHMAANRMGFGNFFNP
LYQVDKLKQGLLQGNLSSVNFFIKTILQLYNAHKANNRFEISNIVKRDSPLFDKRYIIDA
VDKKAVLDNAKTSVDKLLKLWENEEQPTLMDILLEVRESSIFTIPSDLSISIDRTKSLGE
EEENEEDEDDGKALLAWDVALNANFDEIIRYNEYISGSSNFGTHQGVKGLEFERVLVIID
DEESKGFMFSYDKLFGIKELTKNDNENIAGGIETGIDRTSRLFYVACSRAKNSLAIVAYT
DKPEQLMANLLELEWFSKDEIEIVK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgatagctgaaaataatgatatcgatttacaaattgatgaggatatttttaattgttta
aaccccatatctttaaagagtttctttctttttgcaggtgcaggttctggcaaaacaagt
acattagttaatgtcttgactaaatttaaggaaacttttgggaatgaatataagtttagg
aatcgaaaaattgcgataataacttatactaacgctgctgctgacgaaattaatcacagg
ctttcctatgattcaatttttgaagtaagtacgattcatagtttttgctgggaattgatt
aaaaactttacagcagatataaaaatatggattgaaaacgatgcgaaagaatccatcgtt
gatcttgaagacaagttgtcaagagctagagatcctaataataaaactgcgatatctaat
agaaaaaaattagactctaagaataaaagactgcttgcactgccaacgataaataagttt
gtatataatcccaatggagataattacagcaaagcatcagtaaatcactctgaagtcata
tcaatagcttgctattttttagtttcaaagaatttatttaagcaagtgttaataaacaaa
tatccaattgttttaatcgacgaaagtcaagacactaaaaaagatttaattgaagctctt
ttcaaaattcaatctgaatataaagaatctttttcgctagggttattcggagatactatg
cagcgtatttatagtgatggtaaagagaaacttggagaagatctgcctgaagattggttg
gagccagccaaacaaatgaatcatcgatcaaaatctagaattattgaattaaacaataaa
attagaaaggagattgatgggcaaaaacagttggcaagggttgaaaagtcaggtggcact
gttaggttttttattgtcccaagaggattagaaaaaatgacagtagaaaaaaagataaaa
gaaagtatgattgaatttgctgaggatgaaaaatggaatgatgatagttcaattaaaaca
ttaactctagagcatcatatggcagcgaatagaatggggtttgggaatttttttaatcct
ttatatcaggttgataagctaaaacaaggtttattgcaaggtaatttatcttctgtcaat
ttcttcataaaaacgatactgcaattatataatgctcataaagcaaataatagattcgaa
atatcaaatattgtaaaacgagattccccgttatttgacaaacgatatattattgatgca
gtagacaaaaaagctgtcttagataatgccaaaacaagcgttgacaagctattgaaatta
tgggaaaatgaggagcaaccaactttaatggatatactattggaagttagggaatcgagc
atatttactattccaagtgatttaagcatatctattgataggacaaaaagtttaggtgaa
gaagaagaaaatgaagaagatgaggatgacggtaaagcattattagcttgggatgtagca
ttaaatgccaattttgatgaaataatcagatataatgaatatatatctggcagttcaaat
ttcggaactcatcaaggggttaaaggattagagtttgaaagagttttagtaattattgac
gacgaagaatctaaaggatttatgttcagctatgacaaactgtttggtataaaagaacta
acaaaaaatgataatgagaatattgcaggagggattgaaactggaattgatcgaacctca
cgacttttttatgtggcgtgcagtagagcgaaaaatagtttagctattgtagcatatact
gacaaaccagagcaactaatggctaatttgttagagttagaatggtttagtaaagatgaa
attgaaattgttaaataa
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