Flavobacterium crocinum: HYN56_10515
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Entry
HYN56_10515 CDS
T06596
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYN56_10515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcr03021
]
HYN56_10515 (rpoC)
03400 DNA repair and recombination proteins [BR:
fcr03400
]
HYN56_10515 (rpoC)
Enzymes [BR:
fcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYN56_10515 (rpoC)
Transcription machinery [BR:
fcr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYN56_10515 (rpoC)
DNA repair and recombination proteins [BR:
fcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYN56_10515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AWK04636
UniProt:
A0A2S1YKV2
LinkDB
All DBs
Position
2287258..2291568
Genome browser
AA seq
1436 aa
AA seq
DB search
MMNNRNNNKDKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCER
IFGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSL
PNKIGYILGLPSKKLDMIIYYERYVVIQPGIAKNADGESLQRLDFLTEEEYLNILDTLPQ
ENQYLDDLDPNKFVAKMGAECIMDLLARIDLDALSYELRHSANNETSKQRKTEALKRLQV
VESFRESNENRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRL
KRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFR
QNLLGKRVDYSARSVIVVGPELKLYECGLPKDMASELYKPFVIRKLIERGIVKTVKSAKK
IIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNA
DFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERIS
TEDHKIIGQDLTFYSAEEVNIALNEGRLELNARVKIRAKDFNDAGELVYKIIQTTAGRVL
FNEVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFRGGLSFS
LGDIRIPEQKTKLIADAREQVEGISTNYNMGLITNNERYNQVIDVWTSANAQLTELAMKN
IREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKE
GLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVAAL
KKNEEIVESLGERILGRVALQDVINPLTNEVMVKSGEQITEAIMRTIEASPIEKVEVRSP
LTCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGIS
EESSIVTRFAGRLEIEDLKTVKGEDGEGNSVDIVVSRSTELKLVDEKTGIVLNTHNIPYG
SSIFVGDGETVAKGTVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKV
ISEARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGD
ITGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKLSS
QILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFE
VVIRQMMRKVKVEDPGDTLFLEDQLIHTKDFILQNDKLYGMKVVEDAGDSSVLKPGQIIT
PRELRDENSLLKRTDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLN
EAAVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataacagaaacaataataaagataagaatccagtaaaaagatttaacaaaatt
tctattggattggcttcaccagaatctatcttgaaagaatcaagaggagaggttttaaag
ccagaaacaatcaactatagaacgcacaaaccagagcgtgacggacttttctgcgaaaga
atcttcggaccagtaaaagatttcgaatgtgcttgtggtaagtataaaagaattcgttac
aaaggtatcatctgtgaccgttgtggtgttgaagttactgagaaaaaagtacgtcgtgat
agagtaggacacatcaaccttgttgtgccaatcgctcacatctggtacttccgttctctt
ccaaacaaaattggttatatccttggtcttccatctaagaaattagatatgatcatttac
tacgaaagatacgtagtaattcagccaggtatcgctaaaaatgcagatggagaatcatta
caaagattagatttcttaactgaagaagaatacttaaatattttagatactcttccacag
gaaaaccaatatttagatgatttagatcctaataaatttgttgccaaaatgggagcagag
tgtattatggatttattagctcgtattgacctagatgctttatcttatgaattaagacac
agcgctaacaacgagacttcaaaacaaagaaaaactgaggctttaaaaagattacaagtt
gtggagtctttccgtgagtctaacgaaaaccgcgaaaaccgtccagaatggatgattatg
aaagtggttccagttatcccgccagaattacgtccgcttgtgccacttgatggaggtcgt
tttgcaacttcagatttgaacgatttatatcgtcgtgtaatcatccgtaacaaccgtttg
aaaagattaatggagattaaagctccagaagttatcttaagaaacgagaaacgtatgtta
caagaatctgtagattcattatttgataacactcgtaaagcttctgctgttaaaacagaa
tctaacagaccattaaaatcattatctgactcattaaaaggtaagcaaggacgtttccgt
caaaacttacttggtaaacgtgtggattattctgctcgttcggtaattgtcgttggtcct
gagttaaaattatacgaatgcggattgccaaaagatatggcttctgagttatacaaacct
ttcgttatccgtaagttgatcgaaagaggtattgtaaaaacagtaaaatctgctaagaaa
atcattgacaaaaaagagcctgtagtttgggatatccttgaaaacgtaattaaaggacac
ccagtattactaaaccgtgctcctactttgcacagacttggtattcaggctttccagcca
aaattaattgaaggaaaagcgatccagttacacccattagtatgtacggcattcaacgcc
gatttcgatggtgaccagatggcggttcacttaccattagggccagaggctattttagag
gcacaattattaatgttggcttctcacaatatcttgaaccctgcaaatggtgctccaatt
actgtaccttctcaggacatggtcttgggtctatattatatgaccaaagagcgtatctca
acagaagatcacaaaattattggtcaggatttaactttctattctgctgaagaagtaaat
attgcattaaacgaaggaagattagaattgaatgctcgtgtgaaaattagagcaaaagat
tttaatgacgctggagaattagtgtacaaaatcattcaaacaactgcaggacgtgtatta
tttaacgaagtagtacctgaagcagctggatatatcaacgacgtattgactaagaaaaac
cttagagatattatcggacacattttaagtgtgactgatgtacctacaacggcagctttc
ttggataatatgaaagatatgggttataaatttgcatttagaggaggtttatcattctct
ttaggtgatattagaattccagaacaaaaaacgaagttaattgcagatgccagagagcaa
gttgaaggtatctcaactaactataacatgggtcttatcacaaataacgagcgttacaac
caagttattgacgtatggacttcggcaaatgctcagttaacagagttagcaatgaaaaat
attagagaagaccaacaaggtttcaactctgtatatatgatgcttgactctggggcgagg
ggttctaaggagcagattcgtcagttaactggtatgcgtggtttgatggctaagcctaaa
aaatctactgctggtggtggtgagattattgaaaacccgattctttctaactttaaggaa
ggtctttcgatccttgagtacttcatttctactcacggtgctcgtaaaggtcttgcggat
acggctcttaaaacggccgatgctggttacttgacaagaaggcttcatgacgtttctcaa
gatgttattgttaacatcgaagattgtggaactttaagaggtgttgaagttgctgcattg
aagaaaaatgaggaaatcgttgaatctttaggagagagaattttaggacgtgttgcatta
caagacgttattaatcctcttactaacgaagtaatggttaaatctggagaacaaattact
gaagcaattatgagaactatcgaagcttctccaattgaaaaagtagaagttagatctcca
ttaacttgtgaagctttaaaaggtatttgtgcgaaatgttacggtagaaacttagctact
ggtaagatgacacaaagaggtgaagctgtcggagttattgcagctcagtctattggagag
ccaggtacacagttgacacttcgtacgttccacgttggaggggttgccggaggtatttct
gaagaatctagtattgttacaagattcgcaggtagacttgaaattgaagatttaaaaaca
gttaaaggagaagacggagaaggtaactctgttgatatcgtagtttcacgttcaacggaa
ttaaaattagttgacgagaaaactggaattgttttaaatacacataacattccttacggt
tctagtatcttcgttggagatggagaaactgtagctaaaggaactgtaatctgtaaatgg
gatccatataacggtgtaattgtttctgaatttactggtaagattgcttacgaggattta
gagcaaggacaatcgttcatggtggagattgatgagcagactggtttccaggaaaaagta
atttctgaggctagaaacaaaaaattaatcccaactttattagtttatggtaaagaaggt
gaattgattcgttcttacaacttgccagtaggtgcacacttaatggttgaaaacggtgag
aaaattaaagcaggtaaagtattagtaaaaatcccacgtcgttcttctaaagcaggagat
atcacgggaggtttaccaagaattactgagcttttagaggctcgtaacccttcaaaccca
gcagttgtatctgaaattgatggagttgtatctttcggtaaaatcaaaagaggtaaccgt
gagatcgttatcgaatctaaatttggtgagattaaaaagtatttagttaaactttcaagc
caaatcttagtgcaagaaaatgacttcgtaagagcgggagttccattgtctgatggtgca
attacaccagatgatatcttgagaattcaaggaccagcagctgttcaacagtacctggta
aatgaaattcaagaggtttaccgtctacaaggggtaaaaattaatgacaaacactttgag
gttgtaattcgtcaaatgatgcgtaaagttaaggttgaagatccaggagatactctattc
ttagaagatcaattgatccacactaaagactttatccttcaaaatgataaattatacgga
atgaaagtggttgaagatgccggagattcttcagtattgaaaccaggtcagattattacg
cctcgtgaattacgtgatgaaaattcattattgaaacgtacagataaaaatcttgttgta
gcaagagatgtaattactgcaactgctacgccagttcttcaaggtattacaagagcttcg
ttacaaactaaatcattcatttctgcggcttcattccaggagacaacgaaagtacttaac
gaagctgcagtagctggtaaagtagatgacttagaaggattaaaagaaaatgtaattgtt
ggacacagaattcctgcgggaactggtatgagagaatacgataacactatcgtaggatct
aaagacgattacaacgaaatgatggctaataaagaagaatacatttattaa
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