Flavobacterium crocinum: HYN56_13120
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Entry
HYN56_13120 CDS
T06596
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN56_13120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcr03019
]
HYN56_13120
03009 Ribosome biogenesis [BR:
fcr03009
]
HYN56_13120
Enzymes [BR:
fcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN56_13120
Messenger RNA biogenesis [BR:
fcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN56_13120
Ribosome biogenesis [BR:
fcr03009
]
Prokaryotic type
rRNA helicases
HYN56_13120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AWK05124
UniProt:
A0A2S1YM15
LinkDB
All DBs
Position
complement(2927772..2929679)
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AA seq
635 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYDDIVSILSDTPDEKST
WLFSATMPQEVARIAKQFMSDPLEITVGAKNSGSSTVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKSIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFIAYYKKNRDISVSGGERRERSDSEPREFNNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDIFKVDVKEGFSFFNTDPQHTDKVMDVLNNVQLEGRRINVEISKNDGG
GRRDHNNRGGRRDSGRRDGNFAPRREGGFRSDRNSSRDGGSREGGFRSDRNSSAPRREGG
FRSSAPRNENGGSDRAPRRSENFGDSSRPRRSRRD
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattaaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acggatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgccgacaacagaaatacacaagcattagttttatcgccaaca
cgcgagttatgtttacagattactaacgaacttaaaaactactctaaatacgaaaaaggt
attaatgtggtagcagtttacggaggagctagtataacagaacaagcaagagaaataaag
agaggtgcacaaattattgtggcaactccaggaagaatgcaagacatgattaacagaggt
ctggtaaacattaaaaatatagattactgtattcttgatgaggctgacgaaatgttaaac
atgggattctatgatgatatcgtatctattttatcagatactccagatgaaaaaagcaca
tggttgttttctgcaactatgccgcaagaggttgcaagaattgcaaaacaattcatgagc
gatcctctagaaattactgtaggagctaaaaactctggttcatctacagtttctcacgaa
ttttatttagttaatgctcgtgaccgttacgaagctttaaaacgtttagctgatgctaat
ccggatattttctctgtagttttctgtcgtacaaaaagagacactcaggctattgctgag
aagttaattgaagatggatatagcgctgctgcgttacacggagatttatctcaggcacaa
cgtgacggtgtaatgaaatcgttccgtggaagacaaattcagatgcttgttgctactgac
gttgctgctcgtggtattgacgttgataacgtaactcacgttgtaaactaccaattacct
gatgagattgaaacttacaaccaccgttcaggtcgtactggtagagctggaaaattaggt
acttctattgtaatcgttacaaaaagtgaattacgtaaaatttcttctatcgaaagaatc
atcaaacaaaaattcgaagaaaaatctattccttccggaatcgaaatctgcgaaattcag
ttattacacttagcaaacaaaattaaagatactgaggttgatcacgaaattgacaactat
ttaccagcaatcaacaatgttcttgaagatttatctaaagaagaattgatcaagaaaatg
gtttcggtagaatttaaccgtttcatcgcttattacaaaaagaacagagacatttctgtt
tctggtggcgaaagacgtgaaagaagtgattctgaaccaagagagttcaataataatggt
gcagttcgttattttgtaaacatcggttccagagataactttgactggatgtcattaaaa
gattacttaaaagaaacattagatttaggtcgtgatgatatctttaaagttgatgtaaaa
gaaggattctctttctttaacactgatccacagcatactgacaaagtaatggacgtttta
aacaacgtacaattagaaggtcgtcgtatcaatgttgaaatttctaaaaatgacggcgga
ggaagacgtgaccacaacaaccgtggaggaagacgtgattctggaagaagagacggaaac
tttgctccaagacgtgaaggcggatttagaagtgatagaaattcttcaagagacggaggt
tcacgcgaaggtggttttagaagcgacagaaattcatctgctccaagaagagaaggtggc
tttagaagttctgctccaagaaacgaaaatggtggttctgacagagctccaagacgttca
gaaaactttggcgacagctcaagaccaagaagatcaagaagagattaa
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