Flavobacterium crocinum: HYN56_13340
Help
Entry
HYN56_13340 CDS
T06596
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN56_13340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcr03019
]
HYN56_13340
Enzymes [BR:
fcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN56_13340
Messenger RNA biogenesis [BR:
fcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN56_13340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
UTP25_NTPase-like
PhoH
Motif
Other DBs
NCBI-ProteinID:
AWK05163
UniProt:
A0A2S1YM81
LinkDB
All DBs
Position
complement(2977568..2978917)
Genome browser
AA seq
449 aa
AA seq
DB search
MSTFEKFNLPKSLQKAVDELGFVTPTPIQEKSFSVIMSGRDMMGIAQTGTGKTFAYLLPL
LKLYKFTHTNTPKIVILVPTRELVVQVVEEVEKLTKYMSVQTLGIYGGVNINTQKKAVYE
GVDILVGTPGRTMDLALDAVVRFDETQKLVIDEFDEMLNLGFRPQLTSLFAMMKTKRQNI
LFSATMTDEVDDILNDYFEFPEEVTLAPSGTPLEKITQITYNVPNFNTKVNLLKHLLETD
ESMSRILVFVNNKKISDMLFNRIDELFEGQFGVIHSNKSQNYRLSTMAEFQEGNLRGLIT
TDVMARGLDISNITHVINFELPEEPELYMHRIGRTGRADARGTAISFVTPREEEFKIETE
LLMDLELDIADFPEEVEISEKLIEAEKDKLPRKFLLKKPKLEGDGAFHEKSKKNQKINLG
GPSKTKKKTHGSVNRNMLKTRAKKKKDNK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagcactttcgaaaaatttaatcttccaaaatcattacaaaaagcagttgacgaatta
ggatttgttacgcctactcctattcaggaaaaatctttttctgtaatcatgtctggacgt
gatatgatgggaattgcacaaaccggaaccggtaagacatttgcttatttactgcctctt
ttaaaactttacaagtttactcataccaatactccaaaaattgtaattctggttccaacg
cgtgaattagtagttcaggttgtggaagaagttgagaaactgacaaaatatatgtccgtt
cagacacttggtatttatggtggtgtaaacatcaatacacaaaaaaaagcggtttatgaa
ggtgtagacattttagtggggacacctggaagaacaatggacttagcacttgatgcagtt
gttcgttttgatgaaacacaaaaactggttattgacgagtttgacgaaatgctaaattta
ggtttcagaccacagctgacttcgctttttgcgatgatgaaaaccaaacgtcaaaatatt
ttgttctctgcaacgatgacagatgaagttgatgatattttaaatgattatttcgaattt
cctgaagaagtaacattggcaccatcaggaactcctcttgaaaaaattactcaaatcacg
tataacgttccgaacttcaatacaaaagtaaatctgttaaaacatttattggaaaccgat
gaaagcatgagccgtattctggttttcgtaaacaacaaaaagatttcagatatgcttttc
aatcgtattgatgagctttttgaaggacaatttggtgttattcactctaacaaatctcaa
aattatcgtctgagtacaatggccgaatttcaggaaggaaatcttcgcggcttaattacg
acagacgttatggcaagaggtttggacatttctaatattacacacgtaattaactttgaa
cttcctgaagaacctgagctgtacatgcacagaattggtcgtacaggtcgtgcagatgct
agaggaacagcaattagctttgttactccgagagaagaagaattcaaaatagaaactgaa
cttttaatggatctggagcttgatattgcggatttccctgaagaagttgaaatttcagaa
aaacttattgaagcagaaaaagataaattaccaagaaaatttttgttgaagaaacccaaa
ctggaaggtgatggtgcttttcatgaaaaatctaaaaagaaccaaaaaatcaatcttgga
gggccatcaaaaactaaaaagaagactcacggttctgtaaacagaaatatgctgaaaaca
agagctaagaagaaaaaagataacaagtaa
DBGET
integrated database retrieval system
