Flavobacterium crocinum: HYN56_14765
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Entry
HYN56_14765 CDS
T06596
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fcr
Flavobacterium crocinum
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fcr03016
]
HYN56_14765
Enzymes [BR:
fcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HYN56_14765
Transfer RNA biogenesis [BR:
fcr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HYN56_14765
Prokaryotic type
tRNA splicing ligases
HYN56_14765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWK05430
UniProt:
A0A2S1YMW5
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All DBs
Position
3285482..3286873
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AA seq
463 aa
AA seq
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MGNKLSGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTW
GKVAEGLIKPVQVRMHQLKNTRAPFKIFGENEIDDQAKFQLYDSLKLPVSVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGKEHQLEAILKDNTKFG
MYETHASRVDHEVFYNSGFRDIPLLKNLLPKAYKQLGTSGGGNHFVEFGIAKIDNPENEW
KLEKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVITIENHHNFAWKEMVNGQECIVHRKGATPAGE
GQLGIIPGSMTAPGFIVKGKGNPESLNSASHGAGRLFSRAKCKSTFTQSEIKKVLKANDV
TLIGGNIDEAPMAYKDITKVMANQTELVDVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatctggaaaagacctgattaaattgggttttccaaagaacaattca
ataaacattgccttagggcagataaacagatatagaaaaagagaaaaaaaagaatctatt
ctaacagaagcaaaagatgttttgcttaatcctgaaaagtacgaaggaaacggaacttgg
ggaaaggtagctgaaggtttgattaagcctgttcaagtaagaatgcatcagcttaaaaat
actagagcaccgtttaaaatttttggagaaaatgaaatcgacgatcaggcaaaatttcaa
ttgtatgattcgttgaaactgccagtttcggttgcgggagctttaatgccggacgcacat
tcaggttatggattaccgatcggcggtgttttggcgacagataatgctgtaattccgtat
ggagttggtgttgatattggatgccgaatgagtctttcgatttttgatttgccagcttct
cattttaagggaaaagagcatcagttggaagcaattttaaaagacaatacaaagttcgga
atgtatgaaacgcacgcttctcgtgtagatcatgaggtgttttacaatagtggatttcga
gatattccgttattgaaaaatcttcttccaaaagcctataaacaattaggaacatctggc
ggaggaaatcattttgtagaatttggaattgctaaaatcgataatcctgagaacgaatgg
aaattggaaaaaggcgaatattttgctgttctttcacacagcggttctcgtggattgggt
gcaaatattgcgaagcattatacgtatttggcaacaaaacaatgtccattaccaaagaat
gtccaacatttggcttggttggatttgaatacgcatgatggtcaggaatattggctggcg
atgaatttagctggagaatatgccaaagcctgccatgatgatattcacagacgaattgcc
aaagcaattggaaaaagagtagtaataacgattgaaaatcatcacaattttgcctggaaa
gaaatggtaaatggtcaggaatgtattgtgcacagaaaaggtgcaacacctgcaggagaa
gggcaattaggaattattccgggttcgatgaccgcaccaggttttattgtaaaaggtaaa
ggaaatccagaaagtttgaattctgcttcgcatggtgcgggacgtttgttttcgagagcg
aaatgcaaaagtacttttacgcaaagcgaaatcaaaaaggttttgaaagccaatgatgta
accttgataggaggaaatattgatgaagcgccgatggcctacaaagacattacaaaagta
atggcaaaccaaactgaattagtggacgtgttgggaactttcacgccaaaaattgttaga
atggaccgctaa
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