Flavobacterium crocinum: HYN56_17545
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Entry
HYN56_17545 CDS
T06596
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03420
Nucleotide excision repair
fcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYN56_17545
03430 Mismatch repair
HYN56_17545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcr03400
]
HYN56_17545
Enzymes [BR:
fcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN56_17545
DNA repair and recombination proteins [BR:
fcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYN56_17545
MMR (mismatch excision repair)
Other MMR factors
HYN56_17545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AWK05931
UniProt:
A0A2S1YPE6
LinkDB
All DBs
Position
3955256..3957592
Genome browser
AA seq
778 aa
AA seq
DB search
MQKYIDQLNEAQRAPVLKKDGPMIIIAGAGSGKTRVLTIRIAYLMAQGIDAFNILSLTFT
NKAAREMKHRISDIVGASEAKNLWMGTFHSIFARILRAESDHLGYPSNFTIYDSQDSARL
ISSIIKEMQLDRDVYKPKQILGRISNYKNSLITVKAYFNNPELVEADAMAKRPRLGEIYQ
QYVERCFKAGAMDFDDLLLKTNELLNRFPEVLAKYQDRFRYILVDEYQDTNHSQYLIVRA
LSDRFQNICVVGDDAQSIYAFRGANINNILNFQKDYEGVIMFRLEQNYRSTRNIVEAANT
VMEHNKTKLDKVVWTANEFGPKIKVHRSLTDAEEGRFVASTIFEQKMQHQLHNGSFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLCYLRLVLNPKDEEALIRVINYP
ARGIGDTTVEKLTIAANHYKRSIWEVMVNIDKIDLKLNAGTKNKLKDFVTMIQSFQVIDQ
NQDAFYITDHVAKKTGLVQELKKDATPEGMAKIQNIEELLNGIKDFTEGQREIDGARGAL
SEFMEDVALATDLDKDTNDDDRVALMTIHLAKGLEFPHVFVVGMEEDLFPSAMSMSTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEIEDQYLEYLTPSETNY
RYKSPIDGDIFGDVDKSKLRLNKPVAGTPPKNITDNNPKPDLNIRKLKPVTGTNPNASAA
NLFDNKLTIGNIVLHERFGKGEVINLEGVGADRKAEIKFEVGGIKKLLLRFAKLDVVG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatatattgaccagctcaacgaagcacagagagcgcctgttttaaagaaagac
gggccaatgattattattgctggtgcaggttcgggaaaaacccgtgttttaacaattagg
attgcgtatttgatggctcaaggaattgatgctttcaatattttgtcgcttacttttacc
aataaagcggctcgtgagatgaaacacaggatttcggatattgtgggagcatccgaagca
aaaaatctttggatgggaacttttcactcgatttttgcgcgtattcttcgcgcagaatcg
gatcatttaggttatccttctaattttactatttacgattctcaggattcagcgagatta
atttcttcgattatcaaagaaatgcagctggatcgtgatgtatataaaccaaaacaaatt
ttggggcgtatatctaattataagaacagtttgattacggttaaagcatactttaataat
ccggaattggttgaagccgatgcaatggcaaaaagaccaaggttaggagagatataccaa
caatatgtggaacgctgttttaaagccggagcaatggattttgatgatttattgttgaag
accaatgaattactgaatcgttttccagaagttttagctaaatatcaggaccgttttcgt
tatattctggttgatgagtaccaagacacgaaccactctcagtatttgattgttagggct
ttatcggacagatttcagaatatttgtgtggttggagatgatgcgcagagtatctatgct
ttccgtggagcgaatatcaataatattttgaatttccagaaagactatgaaggggttata
atgttccgtttggagcagaattaccgttcgacgcgaaatattgtagaagcggcaaacacc
gtgatggagcataataaaaccaaactggataaagtggtttggacagctaacgaatttgga
ccaaaaattaaagtccaccgaagtttaacagatgctgaggaaggtcgttttgtagctagt
acgatttttgagcagaaaatgcagcatcagttgcataatggatcttttgcaattttgtat
cgtaccaatgcacagtcacgtgcaatggaggatgctttaagaaagcgtgatattccgtat
cgaatttatggaggtttgtctttctaccaacgcaaagagattaaagatgttttgtgttat
ctgcgtttggttttgaatccgaaagatgaggaagcattaattcgtgtgatcaattatccg
gctcgtggaattggagatacaactgtagaaaagctgactattgcagcaaatcactacaaa
cgttcgatttgggaagtaatggtgaatattgataaaattgatctgaaattaaacgccgga
acgaaaaacaaactgaaagactttgtgacgatgattcagagttttcaggtaattgatcaa
aatcaggatgccttttatattacggatcacgttgctaagaaaacaggtttagttcaggaa
ttgaagaaagatgcgactccggaaggaatggcaaaaattcagaatatcgaagagctttta
aacggtattaaagattttacagaaggacaaagagaaattgacggagcaagaggagcactt
tctgagtttatggaagatgtggctcttgcaacagatttagataaagataccaatgatgat
gatcgtgtagcattgatgaccattcacttagcaaaaggattggagtttcctcatgttttt
gtggtgggtatggaagaagatttgtttccgagtgccatgagtatgagtacaagaagtgaa
ttggaagaagaacgacgtttgttttatgtagccttaacaagagcagaacatcaggcgtat
ttgacttatgcgcaatcgcgttaccgttggggaaaactaacagatagtgaaccttccaga
tttattgaagagattgaagatcagtatttggaatatctaactccttctgaaaccaattat
cgttataaatcaccaattgatggtgatatatttggagatgttgataaatctaaattgaga
ttaaacaaacctgttgcaggaactcctccaaagaatattacagataataacccgaaaccg
gatcttaatattagaaaactaaaacctgttacaggaactaatccaaatgcaagtgctgca
aatttatttgataacaaattgacaattgggaatatagtattgcacgaacgttttggaaaa
ggtgaggttattaacctggaaggggttggtgctgacagaaaagcagaaataaaatttgaa
gtcggcggaattaagaaattgttgctaagatttgctaaattagatgtggtaggataa
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