Flavobacterium crocinum: HYN56_18015
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Entry
HYN56_18015 CDS
T06596
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN56_18015 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcr03019
]
HYN56_18015 (recQ)
03400 DNA repair and recombination proteins [BR:
fcr03400
]
HYN56_18015 (recQ)
Enzymes [BR:
fcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN56_18015 (recQ)
Messenger RNA biogenesis [BR:
fcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN56_18015 (recQ)
DNA repair and recombination proteins [BR:
fcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYN56_18015 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HTH_40
RQC
HRDC
RecQ_Zn_bind
ResIII
IF2_N
Helicase_Sgs1
GerE
zf-CXXC
DUF2802
HTH_24
HEM4
HTH_7
Cys_rich_CPXG
Motif
Other DBs
NCBI-ProteinID:
AWK06019
UniProt:
A0A2S1YPL1
LinkDB
All DBs
Position
complement(4064171..4066294)
Genome browser
AA seq
707 aa
AA seq
DB search
MTSEILHATLKENFGFEKFRPNQENIISTILSGQDTLAIMPTGGGKSICFQLPALILPGI
TIVISPLIALMKDQVDSLKTNGIAACYINSSQSSQEQQYYIDNLKSNKFKLVYIAPESLS
YLDMAFNELTISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPVLALTATADKATR
TDITKQLNLKKPKTFIASFDRKNLSLEVRPALDRVKQIIDFVEDKPNESGIIYCLSRKTT
EELAEKLKKNGITAKAYHAGLDNETRAKTQDQFINDDCQVVCATIAFGMGIDKSNVRWVI
HYNLPKNIEGYYQEIGRAGRDGLPAETILFESYADVIQLQKFASEGLNADIQLAKLDRMK
QYADAVSCRRKILLSYFGELVTENCGNCDICKNPPTFFDGTILAQKALSAITRLKESEPL
AVIIDFLRGSRNTYIYEKNYQELKTYGIGDDVSWYDWNQYLIQLINLGYCEIAFHQHNKI
LLTPFAKKVLFEGEKVKLTTVVKKTIEKAEIRETRTKVVKNSLFEALRKLRYEIAQEEEV
PAYVIFSDASLRQMEILRPMSDEEFLAVEGVGKAKLEKYGDDFIKAIIEFERNKSVVKKE
KKESTYSKTLELFQSGISVKEIAEQRNLGETTIISHLAKLYVDGNDINLSQFVSEDEIQS
IEKAQIELENPNALRPYFEYFEEKMSYDKIRFGLAFLERKQKLVLSS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgacttcagaaattttacacgcaactttaaaagaaaattttggttttgaaaaattcaga
ccaaatcaggaaaatataataagtacgatactttcgggacaagatacattagcaattatg
cccacaggtggaggaaaatcgatatgctttcagcttccggctttaatattacctggaatc
acaattgtaatttctcccttgattgctttaatgaaagatcaggttgatagtttgaaaaca
aacggaatagccgcttgttatatcaatagttcacaatcttcacaagaacagcagtattat
attgacaatctaaaatctaataaattcaaattagtttatattgctccggaaagtctttcg
tatctggacatggcttttaatgaattaactattagcctgatagcaattgatgaagcgcac
tgtatttcatcctgggggcatgatttcagacctgcctacaccaatttgggatatttaaaa
agtcgcttcccttctactccggttctggctttaacagcaacagcagacaaagctacacgt
acagatattaccaagcaactgaatctaaaaaagcctaaaacgtttattgcttcttttgat
cgaaaaaatctgagtttagaagttcgtcctgcattagatcgtgttaaacaaataattgat
tttgttgaagataaacctaatgaatccggaattatttactgccttagtcgcaaaacaact
gaagagcttgcagagaaattaaagaaaaacggaattacagcaaaagcttatcatgctggt
ctggataatgaaacccgagccaaaactcaggatcagtttattaatgacgattgtcaggtt
gtttgtgcgactattgcttttgggatgggaattgacaaatctaacgttcgttgggttatc
cattataatcttcctaaaaatatagaaggatattatcaggaaattgggagggctggtcgt
gatggccttccggcagaaactattttatttgaaagttatgcagatgtgattcagcttcag
aaatttgcatctgaaggattaaacgcagatattcagctggcaaaattagatcgtatgaag
cagtatgctgatgccgtaagctgtcgtagaaaaattcttctttcttattttggagaactt
gtcaccgaaaactgtggaaactgcgatatttgcaaaaatcctccaacttttttcgatggg
acgattctcgcccaaaaagctttgtcagcaatcacacgtttaaaagaatcggagcctttg
gcagtaattatagactttttgcgaggctcgagaaatacctatatctacgaaaaaaattat
caagaactaaaaacgtacggaattggcgatgatgtttcctggtatgactggaatcaatat
ttaattcagcttataaacttaggatattgcgaaatcgctttccatcagcacaacaaaata
ttactgactccttttgctaaaaaagttttatttgaaggcgaaaaagtaaagttaactact
gttgttaagaaaacaattgaaaaagcagaaattagagaaactagaactaaagtcgttaaa
aattctctttttgaagcacttcgtaaactacgctatgaaattgcacaagaagaagaagtt
ccggcttatgttattttcagtgatgcatcgttgcgccagatggaaattttacgcccaatg
agtgatgaagagtttcttgctgtggaaggtgtcggaaaggcaaaattggagaaatacgga
gatgattttatcaaagctattatagaatttgaaagaaacaaatctgtagtcaaaaaagag
aaaaaagaaagtacgtactctaaaacactagagttgttccaaagtggaatttctgtaaag
gaaattgctgaacaacgaaatttaggcgaaaccacaattatttctcatttagccaaatta
tacgttgatggaaatgatatcaatttaagtcaatttgtttcagaagatgaaattcaatct
attgaaaaagcgcaaatagaactggaaaatccgaacgcattaagaccttattttgagtat
tttgaagaaaaaatgtcctatgataagataagatttgggttggcatttttggagagaaaa
cagaaattagttttgtcatcttga
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