Flavobacterium crocinum: HYN56_22035
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Entry
HYN56_22035 CDS
T06596
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fcr
Flavobacterium crocinum
Pathway
fcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN56_22035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcr03019
]
HYN56_22035
Enzymes [BR:
fcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN56_22035
Messenger RNA biogenesis [BR:
fcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN56_22035
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWK06763
UniProt:
A0A2S1YRW1
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All DBs
Position
5201586..5202833
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AA seq
415 aa
AA seq
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MLFEDLSLSKSIQRAVFEEGYLNPTPIQEKSIPVVLEGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALVVTPTRELAVQIGQSFDTYAKYTNLTQLTIFGGVSQNPQVD
ALKNRIDILVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLQDPEKVEVSPVSSTAEKVEQRVYFVDKTEKRNLLYSLI
KEENLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDELPYWKDI
QKLIKVDVKTISDHPYQWHSGSPEAGEKPKNSNRSGGAHKSRKSNSSKKNKKRWY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactttcaaaaagtatacaaagagctgtatttgaagaaggc
tatttaaatccgacacctattcaggaaaaatcgattcctgttgttttagaaggtcgtgat
ttaattggctgtgcacagacaggaacaggaaaaacggctgcatttgccatccctattata
catcagttacacagaattgtaggttcatcaaaaaaagcaaaacaaattcgtgcgcttgtt
gtgactccaacgcgtgaattagcggttcaaattggccaaagttttgatacttacgccaaa
tacaccaatttgacacaactgactatttttggaggggtttcccaaaaccctcaggttgat
gctttaaaaaacaggatagatattctggttgcaactccggggcgtttacttgaccttcat
aaacaaggcttccttgatttaaatcatctgcacactttagtacttgatgaagccgatcaa
atgctggatatgggttttataaacgatgtcaaaaaaattgtaaagcttacaccaaaaaac
agacaaacattacttttttctgcaacaatgccaattgcaattcgtgaactggcagaaatg
ttccttcaggatcctgaaaaagtagaagtttcgcctgtttcgtcaacagccgaaaaagta
gaacaacgtgtttattttgtagataaaacagaaaaaagaaacttattgtacagtttaata
aaagaagaaaatctatctaacgtacttgttttttcgagaacaaaacatggtgctgacaat
gttgtaaaagcgcttcgtaaaaaagatattcctgcagaagctatccacggggacaaatct
caaaatgccagacaaagggttttagacgcctttaaaaataaagaagttggcgttttggtt
gcgacagatattgcagcaagaggaattgacattgaacagttgccttatgtaatcaatttt
gatttacctaatattcctgaaacttatgttcaccgaattggtcgtacaggtcgtgccgga
aatggcggaattgctatttctttctgtggtaaggacgaattaccatactggaaagacatt
cagaaattaattaaagttgatgtaaaaacaatttcagaccatccgtatcaatggcattca
ggaagtccggaagccggagaaaaacctaaaaactcaaacagaagcggtggagctcataaa
tcgagaaaatccaattcttctaagaaaaataaaaaacgctggtactaa
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