Flavobacterium collinsii: TRV642_1296
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Entry
TRV642_1296 CDS
T08703
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fcs
Flavobacterium collinsii
Pathway
fcs03030
DNA replication
fcs03430
Mismatch repair
fcs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TRV642_1296
03430 Mismatch repair
TRV642_1296
03440 Homologous recombination
TRV642_1296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcs03032
]
TRV642_1296
03400 DNA repair and recombination proteins [BR:
fcs03400
]
TRV642_1296
Enzymes [BR:
fcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TRV642_1296
DNA replication proteins [BR:
fcs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TRV642_1296
DNA repair and recombination proteins [BR:
fcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TRV642_1296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
SRP14
Motif
Other DBs
NCBI-ProteinID:
CAI2766288
UniProt:
A0A9W4X2T8
LinkDB
All DBs
Position
TRV642:1362684..1367222
Genome browser
AA seq
1512 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPDGFNIPY
DAERIHGISTELADADGITLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVDS
PMSSMPVLDTCTEVTASLLKLPGGRGGRFKLPTLTELHEYLFNKPFAEAHNATADVEATT
RCFLELIRREVFTKEELDVPKDYFKEFQSRNPQEFPLIGLKHINLKKASDKIREQLKALE
SVGQEPTVSHSDREDFKEAKYAHLHNHTQFSVLQSTIGIGNIVSATAKNGMPAVAMTDTG
NMMGAFHFVSAVMNHNKGASAKNKALVEAGEEPTETEIKPIVGCEFNVCENHLDKSKKDN
GNQIVLLAKNKNGYHNLAKMSSIAFTNGFYYVPRIDRKIVEKYKEDIMVLSGNLYGEIPS
KILNVGENQAEEALIWWKEQFGDDFYLEVMRHNQEDENRVNKTLIEFSKKHDVKLIATNN
TYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYYKSGEEMKKLFADLPD
AIINIQEIIDKVEGYSLYRDVLLPKFDIPEEFVVAEDEADGGVRGENKYLRHLTMVGAKK
RYGEITESIQERLDFELLTISNSGYPGYFLIVQDFIAEARNMDVSVGPGRGSAAGSAVAY
CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMEYVINKYGQNQVAQIIT
YGKMATKSAIRDTARVLDLPLFEADRIAKLIPAMMPSKWNLARFISESEDEVKKALRSDE
YDNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNFVPVTTAKDS
DLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRNGIDLDPDTFPIDDVETYA
LFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEE
IKYDLDACEEYLGETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQKDVLDKMKP
KFVEQAAKKGHDAKVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAA
VLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDEYAVRFGMGAIKGVGSGA
VATIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDG
ITFYEKAMRYGSKFQENENSSQVSLFGEASEVQIAEPVVPPCEDWSTMEKLAKEKEVVGI
YISGHPLDDFRFEMKYFCNSRLESLKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWAVFN
LEGYDESYEFKIFGEEYLKFRHFLIQNNFAFIKILIKDGWVNHDTGKKSDPRMQFVEIRQ
LQDILEAFAKKLILLLNIKDLGTEFIHQLSHLFSENKGDNSVTFEIMELEKVKRLVEVET
PTDFEETDDAVFVDENDREDDGIEETKIQEVNEVEEIKVVTKLTMPSRRLKVKISTELLI
ELEKMQVNFKLN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaatattcgataccgaaactactggattaccaaaacgttgggatgctccaata
actgattctgataactggccccgctgtattcagatcgcatggcagctgcatgacgaaatg
gggcagcttatagaacatcaggattacctggtgaagcctgacggatttaatattccgtat
gatgcagaacgtattcacggaatttcgacagagctggcagatgccgatggaatcactctg
gcagaagttttggagaaattcaatattgctttaagtaaaaccaaatttattgtaggtcag
aatttaggttttgacgtcaatattatgggagccgaatttcatagaatgggagtggattct
cctatgagttcaatgccggttttggatacttgtacagaagttaccgcttcattattaaaa
cttccgggaggacgtggaggaagattcaaattgccaacgttaacagaattacatgaatat
ctttttaataaacctttcgcagaagcgcacaacgcaactgccgacgttgaggcaactacg
cgttgttttctggaattaataagaagagaagtttttactaaagaagaactggatgttccg
aaggattattttaaggaatttcaaagcagaaatcctcaggagtttccgttaatcggttta
aaacatattaacctaaaaaaagcttctgataaaatcagagagcaattaaaggctttagaa
tctgttggacaagaacctaccgtttcgcattctgacagagaagattttaaagaggcaaaa
tatgcacatttacacaatcatactcaattttcggttctacaatctactataggtattggg
aatattgtttcggctacagccaaaaacggaatgcctgccgttgcgatgacggatactgga
aacatgatgggggcttttcactttgtgagcgccgttatgaaccacaataaaggggcatca
gccaaaaataaagctttggtggaagcaggagaggaaccaacggaaacagagataaagcca
atagtaggttgcgaatttaatgtttgtgagaatcacttagataaaagtaaaaaagacaac
ggaaaccagatcgtattattagccaaaaataaaaatggttaccacaatctggcaaaaatg
tcgtcgatcgcttttacaaacggattttattatgttccgaggattgatcgaaaaattgtc
gagaaatacaaagaagatatcatggttttgtccgggaatttatatggagagattccaagt
aaaattctgaacgttggtgagaatcaggctgaagaagctctgatctggtggaaagagcaa
tttggagatgatttttatctggaagtcatgcgccataatcaggaagatgaaaatcgtgta
aacaaaacactgattgaattttctaaaaagcatgatgttaaattaattgccaccaataat
acttactatttaaataaagaagatgccaatgcccacgacattttgttgtgtgtaaaagac
ggtgaaaaacaagcaacgccaattggacgtggtcgaggatatcgttacggattaccaaat
caggagtattactataagtcgggagaagagatgaaaaagctctttgccgatttgccggat
gcgatcattaacattcaggaaatcattgataaagttgaaggatattcgctttatcgcgat
gtattgcttcctaaatttgatattccggaagagtttgtggttgccgaagatgaagctgat
ggaggtgttaggggagagaataaatatttgcgccatcttactatggtgggggcaaaaaag
cgatacggcgaaattacagagtcgattcaggaacgtttggattttgagctcctgaccatt
tcgaactccggatatccgggttactttttgatcgttcaggattttatcgccgaagccaga
aatatggatgtttcggttggtcccggtcgtggatctgctgccggttctgcggtggcgtat
tgtttaggaattaccaatatcgaccctatcaagtacgatttgctttttgagcgtttctta
aatccggatcgtgtatcgatgcccgatattgatatcgattttgatgacgagggccgtggt
cgtgttatggagtacgtaattaataaatatggtcagaatcaggtagcgcaaattattacc
tatggtaaaatggcgaccaaatctgctattcgtgatacggctcgtgtactggatttacca
ttgtttgaggcagatagaattgcaaaactgattccggcaatgatgccatcaaagtggaat
ttagcacgttttatttcggagagtgaagatgaggttaaaaaagcacttcgttccgatgaa
tatgataatgtaaaagaattgattgctattgccaatgaagatgatttggcaggagaaacc
attcaacaagcaaaaatccttgaaggatcgatgcgaaataccggaattcatgcctgtggg
gtaattattacgccatcggacattacgaatttcgttcccgttaccacagcaaaagattct
gatttgtacgtgacccagtttgataactcggttgcagaaagtgcaggattgctgaaaatg
gacttcttgggtctgaagacccttactctgataaaagacaccgttaaactggtgaaatat
agaaacggaattgatctggaccccgatacattcccgattgatgatgttgagacttatgca
cttttccaaagaggagaaacggttggaatcttccagtatgagtcacccggaatgcagaag
tatatgaaggatctgaaacctacggtttttggagatttaattgcaatgaatgccttgtat
cgtccgggacctttggaatatattccgtctttcgttcgaagaaaaaatggagaagaggaa
attaaatacgatttagatgcctgtgaagaatatttaggagaaacctacggaattacggtt
tatcaagagcaggtaatgcttttgtcgcaatcgctggctgactttacaaaaggtgaggcc
gacgttttgcgtaaggcgatgggtaagaaacaaaaggacgtactggacaagatgaagcct
aaatttgtggagcaggcagcaaaaaagggtcatgatgcaaaagttttggagaaaatttgg
aaagactgggaagcctttgcgagttacgccttcaacaaatcgcactcgacttgttatgcc
tggattgcttatcagacagcttacttaaaggcacattatccggcagaatatatggcggcg
gttctttccaataacatgaacgatattaaacaagtatcgttttttatggaagaatgtaaa
cgaatgggattacaggttttaggaccggatgtaaacgaatcctattataaatttaccgta
aatgatgaatatgcggttcgttttggaatgggagcgattaaaggagtgggttccggagca
gttgcaactattgtagaaaacagaaaggacggaagatacaaatcgatttttgacttggct
aagcgtattgatttgcgtgctgccaataaaaaagcaattgaaaacctggctttggccggt
ggttttgattcatttgaaggaacaacaagagcacagtattttcatgatgatggcgacgga
attacgttttatgaaaaagcaatgcgttacggatcgaaatttcaggaaaacgaaaactcg
tcacaggtaagtttatttggggaagcgagtgaagtgcagattgccgaacctgttgtgcct
ccatgtgaagactggagtaccatggaaaaactggcaaaggaaaaagaagtagtcggaatc
tatatttcaggacatccgttggacgattttagattcgagatgaaatacttctgtaactct
cgattagaatccctgaaaagtatgaatgaatatgtgggtaaaaatttaaattttgccgga
atcataaataatgttcagcatcgtgtggctaaaaacggaaagggctgggctgtatttaat
ttagaaggttatgatgaaagttatgagttcaagatctttggtgaagagtatttaaaattc
cgccatttcctaattcagaataattttgctttcatcaaaatattgataaaagatggatgg
gtgaatcatgatacgggtaaaaaatctgatccaagaatgcaatttgttgaaataagacaa
ttgcaggatattctggaagcttttgctaaaaaattgattttgctattaaacataaaagac
ttggggaccgaatttattcatcaattaagtcatttgtttagtgagaataaaggcgataat
tcagtgacttttgagatcatggaattagaaaaagtaaagagattggttgaggtagaaacg
ccaacagattttgaggaaactgatgatgccgtttttgtggatgaaaatgatcgggaagat
gatggaattgaagaaacaaagattcaggaagtaaatgaggtcgaggaaattaaggttgtg
accaaattaacgatgccaagtcgcaggctaaaagtcaaaatctcaacggagttattgata
gaattggaaaaaatgcaggtaaattttaagctaaactaa
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integrated database retrieval system
