Flavobacterium collinsii: TRV642_1307
Help
Entry
TRV642_1307 CDS
T08703
Name
(GenBank) Alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
fcs
Flavobacterium collinsii
Pathway
fcs00300
Lysine biosynthesis
fcs00470
D-Amino acid metabolism
fcs00550
Peptidoglycan biosynthesis
fcs01100
Metabolic pathways
fcs01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
TRV642_1307
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
TRV642_1307
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
TRV642_1307
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
TRV642_1307
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
fcs01011
]
TRV642_1307
Enzymes [BR:
fcs01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
TRV642_1307
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
TRV642_1307
Peptidoglycan biosynthesis and degradation proteins [BR:
fcs01011
]
Precursor biosynthesis
Amino acid ligase
TRV642_1307
Racemase
TRV642_1307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
CAI2766296
UniProt:
A0A9W4TG33
LinkDB
All DBs
Position
TRV642:1377899..1380370
Genome browser
AA seq
823 aa
AA seq
DB search
MSINIKSLIPVLEAEWTGSDSDVFVDHISIDSRSLQNGSKTLFIALSGVNNDAHLYIEEL
IEKGVQNFVVQYIPENVKGKASFLVVKNTLQALQEFAGYYRDLFTFPIIGLTGSNGKTIV
KEWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINEKHNLGIFEAGISTVNEMVKLEKII
KPNIGVLTNIGSAHDEGFKNLEEKIDEKLLLFKNAAVIIYQNNKLVDECLVKLNQEYFSS
ERVLFSWSFTDESADVFVVKRVNEDETTSIQARYGNEIFDLEIPFSDSASIENAISCLLV
MLYLKYDAETIQNRFQNLYPVQMRLEVKNGINNCSIIDDSYSSDFQSLKIALDFLESQQK
KNASKTVILSDIFQSGFSNEELYTKVAQLIADNKINRVIGIGSTISSFAAKFSNCTTFQN
TAEFIAEIESLNFENETILIKGARSFQFEEIVSLLEEKTHETILEINLNSISHNLNYYKS
KLAANVKLMVMVKAFGYGNGGLEIAKLLEHHKVDYLGVAFADEGISLKNGGIKLPIMVLN
PESTSFPSIIQYHLEPEIYSIKGLKAFLKIAREKNLKDFPIHIKLDTGMHRLGFEESTLD
ELIETLRGNSTVKVKSVLSHLATSDEERHFDFVRSQIRLFETLSVKLITALNINPIRHIL
NTSGISNFPDAQYNMVRLGIGLYGVSNDPAEQKYLENVGTLKSIISQVRTIPAGDSVGYG
RRFMAEKETRIATIPIGYADGISRLWGNQVGYVVIKNQKAFILGSVCMDMLMVDVSEIDC
KEGDSVIIFGENPTVVEMAIALKTIPYEIMTSISQRVKRVFFR
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgagcataaatataaaaagcctgattccggttctcgaagccgaatggactggttcagat
tctgatgtttttgtcgatcatatctcgatcgacagccgttctttacaaaacggatctaaa
actttgtttattgccctgtcaggggttaataatgatgctcatttgtatatagaagaactt
atagaaaaaggagttcaaaattttgtagtacagtatattcccgagaatgtaaaagggaaa
gctagttttttagtagtcaaaaatacgttacaggctttacaggaatttgcaggatattat
cgcgatctgtttacctttcctattatcggattaacaggaagcaacggtaaaacgattgta
aaggagtggttgaatttcctgctgagtccggactataatattatccgaagccctaaaagt
tataactctcaggtgggtgttccattgtcagtaattgccattaatgaaaagcataatctg
ggtattttcgaagccggaatatcgacggttaatgaaatggtgaaactcgaaaaaatcatt
aaacctaatattggagttttaacgaacatcggttctgcacatgacgaggggtttaaaaat
ctggaagaaaaaatcgatgaaaaattactactgtttaagaatgcagctgttattatctat
cagaataataaacttgtagatgaatgtctggtaaagttaaatcaggaatatttttcatca
gaaagagtacttttttcgtggagttttaccgacgaatcggcagatgtttttgtggtgaag
cgagttaatgaagacgaaacaacgagtattcaggcccgttacgggaatgaaattttcgat
ttagaaatcccattcagtgattcagcttccatagaaaatgcgatctcctgtttattggtt
atgctttacctaaagtacgatgcagaaaccattcaaaatcgatttcaaaatctgtatccc
gtacaaatgcgtcttgaggttaaaaacggaatcaacaattgtagtattatcgacgacagt
tacagttcagacttccagtcactcaaaatagcactggattttttagaaagccagcagaaa
aaaaacgcctcaaaaacggttattctgtcggatatctttcaaagcggattttctaatgaa
gaattgtatacaaaagtagcacagttaattgcagacaataaaataaaccgagtaataggc
atcggatcaaccatttcttcctttgctgctaaattttcgaactgtaccacttttcagaat
acagccgaatttatagcagaaattgaaagtctgaacttcgaaaatgaaaccattttaatc
aaaggagcaaggtcatttcagtttgaagaaattgtatcgttgctggaagagaaaacccac
gaaacgattctggagattaacctgaattcgattagtcacaatctcaattattataaatcg
aaattagcggcaaacgttaagctgatggtaatggtcaaggcctttggttatggaaacgga
ggattggaaattgccaaattgctcgaacatcacaaggtagattatttgggagtggcattc
gctgatgaaggaatttcacttaaaaacggcggaataaaactgccaatcatggttctgaat
ccggaatcgaccagcttcccttcaatcatacaataccatttagagcccgaaatatatagt
attaagggactaaaagcttttttaaaaattgccagagaaaagaatttaaaagactttccg
attcacataaaactggacaccggaatgcaccgtctgggttttgaagaaagcactttagac
gaattaattgaaacactgagagggaattcgactgtaaaagtaaaaagtgtgctttcgcat
ttggcaacaagcgatgaggaaaggcatttcgattttgtgcgatctcagattcgcttgttt
gagaccttgtcggtaaaattaattacagccttaaatatcaatcctattcgccatattttg
aacacttccggaataagtaactttccggatgcgcaatacaatatggtgcgcttgggcatt
ggtttgtatggtgtatcaaacgatcctgccgaacagaagtacctcgaaaatgtgggaacg
ttaaaatcgattatttctcaggtaagaacaattccggcaggagacagcgttggttacgga
cgccgcttcatggcagaaaaagaaaccagaatcgctacaattcctattggatatgcagac
ggaatttcacgtttatggggtaatcaggtaggttatgtcgttattaagaatcaaaaagca
tttattttaggaagtgtttgtatggatatgctcatggtagatgtaagcgagattgattgt
aaagaaggagattctgtaatcatttttggcgaaaatccaacagttgttgaaatggcaata
gccttaaaaacaataccctatgaaatcatgaccagcatctcgcaacgggtaaaaagagtg
ttttttagataa
DBGET
integrated database retrieval system
