Flavobacterium collinsii: TRV642_1563
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Entry
TRV642_1563 CDS
T08703
Symbol
ihfA
Name
(GenBank) Integration host factor subunit alpha
KO
K03530
DNA-binding protein HU-beta
Organism
fcs
Flavobacterium collinsii
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcs03032
]
TRV642_1563 (ihfA)
03036 Chromosome and associated proteins [BR:
fcs03036
]
TRV642_1563 (ihfA)
03400 DNA repair and recombination proteins [BR:
fcs03400
]
TRV642_1563 (ihfA)
DNA replication proteins [BR:
fcs03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TRV642_1563 (ihfA)
Chromosome and associated proteins [BR:
fcs03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
TRV642_1563 (ihfA)
DNA repair and recombination proteins [BR:
fcs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
TRV642_1563 (ihfA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
CAI2766514
UniProt:
A0A9W4X5X4
LinkDB
All DBs
Position
TRV642:complement(1658823..1659113)
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AA seq
96 aa
AA seq
DB search
MTKADIVAKISEKLGLEKGDVQATVETFMEEVKTSLETGDNVYLRGFGSFIVKTRAEKTG
RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNNEAK
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagcagatatcgtagcgaaaatttcagagaaactaggtcttgaaaaaggagat
gttcaagcaacagtagaaacttttatggaagaagttaaaacttcactagaaactggagac
aatgtttacctaagaggttttggaagttttatcgtaaaaaccagagctgaaaagactggt
agaaacatttctaagaatacaactatcaagattccagcacacaacattcctgcgtttaaa
cctgcaaaagtttttgtagaaggagtaaaaacaaataacgaagcaaaataa
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