Flavobacterium collinsii: TRV642_2938
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Entry
TRV642_2938 CDS
T08703
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fcs
Flavobacterium collinsii
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fcs03016
]
TRV642_2938
Enzymes [BR:
fcs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TRV642_2938
Transfer RNA biogenesis [BR:
fcs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TRV642_2938
Prokaryotic type
tRNA splicing ligases
TRV642_2938
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAI2767777
UniProt:
A0A9W4TJ00
LinkDB
All DBs
Position
TRV642:3333442..3334833
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AA seq
463 aa
AA seq
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MGNKLSGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLHPEKYEGNGTW
GKVAEGLIKPVQVRMHQLKATRVPFKIFGENEIDQQAKFQLYDSLKLPISVAGALMPDAH
SGYGLPVGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGKEHQLEAILKDNTKFG
MYETHASRVDHDVFYKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAKIENTENEW
KLERGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAAE
GQLGIIPGSMTAPGYIVKGKGNAESLNSASHGAGRLFSRAKCKSNFTQSEIKKVLKANEV
TLIGGNIDEAPMAYKDITKVMANQSDLVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatctggaaaagacctgattaaattagggtttccaaaaaacaattca
ataaatattgccttagggcagatcaacagatatagaaaaagagagaaaaaagaatctatc
ctgacagaagctaaagatgtattgttacatccggaaaaatatgaaggcaacggaacctgg
ggtaaagtagctgaaggtttaataaaaccagttcaggtaagaatgcatcagttgaaggca
acaagagttccttttaaaatttttggagaaaatgagattgatcaacaggcaaaatttcaa
ttgtatgattcgttaaaactgcctatttcagtagccggagcattgatgccggatgcacat
tcgggttacggactgccagttggaggggttttagcaacagataatgccgtaattccgtac
ggagttggagttgatatcggatgcaggatgagcctttctatttttgatttaccggcttcg
cattttaaaggcaaggaacatcagttggaagcaattttgaaagacaataccaagtttgga
atgtatgaaactcatgcttcaagagtcgatcatgatgttttttataaaagtgaatttcag
gatattccattgttaaagaatcttttaccgaaggcttacaaacaactgggaagctctggc
ggaggaaaccattttgtagaattcggaattgctaaaattgaaaatacggagaacgaatgg
aagctcgaaagaggagaatatttcgccgttctttcacacagcggttccagaggattaggc
gcaaacattgccaaacattatacctatttggcaacaaaacaatgtccattaccaaaaaat
gttcaacatttggcctggctggatttaaatacgcatgacggtcaggaatactggctggct
atgaatttagcaggagaatatgcgaaagcctgtcatgatgatattcatcgacgaattgcc
aaagcaattggaaaaagagtagtggtaacaatcgaaaatcaccacaattttgcctggaaa
gaaatggtaaacggtcaggaatgtattgtacatagaaaaggtgcaacgcctgctgcggag
ggccaattgggaattattcccggttcgatgacggcgcccggttatattgtaaaaggcaaa
ggaaatgcggaaagcttaaactctgcttcgcatggcgcagggcgtttgttttcaagagcg
aagtgtaaaagtaacttcactcaaagtgagattaaaaaggtgttaaaagccaacgaggta
accttaattggaggaaatattgacgaagcgcctatggcgtataaagacattacaaaagtg
atggcaaatcaaagtgatctggtggaagtgcttggaacttttacaccaaagatcgttagg
atggaccgataa
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