Flavobacterium collinsii: TRV642_3328
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Entry
TRV642_3328 CDS
T08703
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fcs
Flavobacterium collinsii
Pathway
fcs03420
Nucleotide excision repair
fcs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TRV642_3328
03430 Mismatch repair
TRV642_3328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcs03400
]
TRV642_3328
Enzymes [BR:
fcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TRV642_3328
DNA repair and recombination proteins [BR:
fcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TRV642_3328
MMR (mismatch excision repair)
Other MMR factors
TRV642_3328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
CAI2768133
UniProt:
A0A9W4XAU0
LinkDB
All DBs
Position
TRV642:complement(3766975..3769311)
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AA seq
778 aa
AA seq
DB search
MQKYIDQLNEAQRQPVLKKDGPMIIIAGAGSGKTRVLTIRIAYLMAQGIDAFNILSLTFT
NKAAREMKHRISDIVGASEAKNLWMGTFHSIFARILRAESDHLGYPSNFTIYDSQDSARL
ISSIIKEMQLDRDIYKPKQILGRISNYKNSLITVKAYFNNPELVEADAMAKRPRLGEIYQ
QYVERCFKAGAMDFDDLLLKTNELLTRFPEVLAKYQNRFRYILVDEYQDTNHSQYLIVRA
LSDKFQNICVVGDDAQSIYAFRGANINNILNFQKDYEGVIMFRLEQNYRSTRNIVEAANT
VMEHNKTKLDKVVWTANDFGAKIKVHRSLTDAEEGRFVASTIFEQKMQNQLHNGSFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLCYLRLVINPKDEEALVRVINYP
ARGIGDTTVEKLTIAANHYKRSIWEVMVNIDKIDLKLNAGTKNKVKDFVTMIQSFQVIDQ
NQDAFYITDYVAKKTGLVQELKKDATPEGMAKIQNIEELLNGLKDFTEGQKEIDGARGAL
SEFMEDVALATDLDKDTSDEDRVALMTIHLAKGLEFPHVFVVGMEEDLFPSAMSMSTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEIDGQYLEYLTPAETNY
RYKSPIDGDIFGDIDKSKLRLAKPIGSTPPKHVTGNDPKSDLNIRKLKPVVGTNPNSGAP
NLFDNKLTIGNVVMHERFGKGEVVNLEGVGADKKAEIKFEVGGIKKLLLRFAKLDVVG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagtacattgaccagctcaatgaagcacaaagacagccggttttaaagaaagac
gggccaatgattattattgctggtgcaggttcaggaaaaactcgtgttttaaccattaga
attgcttatttgatggctcaggggattgatgccttcaatattttatcactaacttttacc
aacaaagcggctcgcgaaatgaaacacaggatttcagatatcgtaggagccagcgaagct
aagaatctttggatgggaacttttcactcgatttttgcgcgtattcttcgtgcggaatcg
gatcatttaggttatccttcaaattttacgatttatgattctcaggattccgccagattg
atttcttctattataaaagaaatgcagctggatcgcgatatctataaaccaaagcagatt
ttaggccgtatttcaaactacaaaaacagtttgattacagtaaaagcctattttaataat
cctgaattagtggaagccgatgcgatggcaaaaagaccgcgtttaggagaaatttaccag
cagtatgtagagcgctgttttaaagcaggagctatggattttgatgatttactgcttaaa
accaatgaattactaactcgttttccggaagttttagcgaaatatcaaaatcgtttccgc
tatattctggtggatgagtaccaggatacaaaccattctcaatatttgattgtaagagcg
ttatcggataaatttcagaatatttgcgtggttggagacgatgcgcagagtatttatgcc
ttccgtggagcgaatattaataatattttgaatttccagaaggattatgaaggtgtaata
atgttccgtttggagcaaaattatcgttctacccgaaacatagtggaagccgcaaatacc
gtaatggaacacaataagaccaaactggataaagtagtttggacagcaaatgattttggg
gcaaaaataaaagtccacagaagtttaactgatgccgaagaagggcgttttgttgccagt
accatttttgaacagaaaatgcaaaaccagttgcataacggttcatttgcaattttgtac
cgtaccaatgcgcagtcacgtgcgatggaggatgctttaagaaaacgcgatatcccatat
agaatttacggaggattgtctttctatcaacgtaaagaaattaaagatgtattgtgttac
ctgcgtctggtaatcaatccaaaagacgaagaggctttggttcgtgtaatcaattatcct
gcgcgtggaattggagatacaaccgttgaaaaacttacaattgcagccaatcattacaaa
cgttcgatttgggaagtgatggttaacattgacaaaatcgatttgaaattaaatgccggt
acaaagaataaagtaaaagactttgttactatgattcagagcttccaggtgatcgaccag
aatcaggacgctttttatattacagattatgtagctaaaaaaacgggacttgttcaggaa
ttgaagaaagatgccacaccggaaggaatggctaagattcagaacattgaagagcttttg
aacggtctaaaagattttaccgaaggacaaaaagagattgacggtgcaagaggagctcta
tctgaatttatggaagacgttgcactggctacagacttagacaaagatacttctgacgaa
gatcgtgtagcattgatgaccattcacctggcaaaaggacttgaattcccacatgttttt
gtcgtgggaatggaagaggatctgtttccaagtgccatgagtatgagtacccgtagtgaa
ttagaggaagaacgtcgtttattttacgtagctttaacacgtgcagaacatcaggcgtat
ttgacttatgcacagtcacgttaccgttggggtaaactgacagatagtgaaccatcccgc
tttattgaagaaattgacggtcaatatctggagtatttaacaccggcagaaaccaactat
cgctacaagtcaccaattgacggtgatatttttggagatatagataaatcaaaactgcgc
ttggcaaaaccaattggaagtaccccacctaagcatgttacaggcaatgatccgaaatcg
gacttgaatattcgaaaattaaagcccgttgtaggaaccaacccaaatagtggtgctcca
aatttgtttgataacaaattgacaattggaaatgtagtgatgcatgaacgttttggaaaa
ggcgaggtagtgaatttggaaggtgttggcgccgataaaaaagctgaaataaaattcgag
gtaggcggaatcaagaaattgttgttaagatttgctaaattagatgttgtaggctaa
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