Flavobacterium collinsii: TRV642_4344
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Entry
TRV642_4344 CDS
T08703
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fcs
Flavobacterium collinsii
Pathway
fcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRV642_4344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcs03021
]
TRV642_4344
03019 Messenger RNA biogenesis [BR:
fcs03019
]
TRV642_4344
Transcription machinery [BR:
fcs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TRV642_4344
Messenger RNA biogenesis [BR:
fcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TRV642_4344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
NACHT
AAA_22
OB_RNB
Rho_N
Motif
Other DBs
NCBI-ProteinID:
CAI2769009
UniProt:
A0A9W4X595
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All DBs
Position
TRV642:complement(5014390..5016291)
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AA seq
633 aa
AA seq
DB search
MFDISALKEMKLSELQEIAKLAKTIKFNGVKKETLISQILAHQEATVAPPVNPVAEAEIV
DDKPKRARIVPAKKTPISKNAPVLEFDKVEETPEKTAAPVAVTKTPAIKANPKTNPKIKG
NAVAKETAEVKIAEAAPEVQENTENTGNTENTTVEKKGPKIVKFNKSAYEKKVALQKEKE
ATKEAIPEGEAVAEVSTTEKTEAPVQTKKVNPNQNKNPNPNQNPNQNPNQNPNSNQNGNG
NNGNQNPNHKNKKNNFRDSDFEFDGIIESEGVLEMMPDGYGFLRSSDYNYLASPDDIYLS
TSQIRLFGLKTGDTVKGVVRPPKEGEKFFPLVRVLKINGHDPQVVRDRVSFEHLTPVFPS
EKFKLAEKGSSVSTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDIANAIAANHPEVYLI
VLLIDERPEEVTDMQRSVRGEVIASTFDREPQEHVKIANIVLEKAKRLVECGHDVVILLD
SITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNVENGGSLSIIATALTETGS
KMDEVIFEEFKGTGNMELQLDRKIANKRIFPAIDLTSSSTRRDDLLLDEKTLQRMWIMRK
YLSDMNPVESMDFVNDRFKKTRNNEEFLISMND
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttctgcattaaaagaaatgaagctttctgagcttcaagaaatagctaag
ttagctaaaactataaagtttaatggtgttaaaaaagagactttaatcagtcagattttg
gcacatcaagaagcgactgtagcgccgccggttaatcctgtggcagaagcggaaatagtt
gatgataaaccgaaaagagcaagaattgttccagccaaaaaaacacctatcagtaagaat
gcaccagttctggaatttgataaagtagaggaaactcctgaaaaaaccgcagcaccggtt
gcagtaactaaaactccggctattaaagcaaatcctaaaacaaatcctaagataaaagga
aatgcagtagcgaaagaaacagcagaagttaaaattgccgaagcagctccggaagttcag
gaaaatactgaaaatacagggaatacagagaatacaacagtagagaaaaaaggaccaaaa
atcgtaaaatttaataagtcggcttacgagaaaaaggtcgctttgcaaaaagaaaaagaa
gctacaaaagaggcaattccggaaggtgaagctgtagcagaagtttcgacgactgaaaaa
acagaagcaccggttcaaactaaaaaggtcaatccgaaccaaaataaaaatccgaatcct
aaccaaaacccaaatcagaatccaaatcagaatccaaattctaatcaaaatgggaatgga
aataacgggaatcaaaatccaaatcataaaaataaaaagaataatttcagagattcagac
tttgagtttgatggaattatcgaaagtgaaggtgttcttgaaatgatgccggacggttat
ggttttttacgttcatcagattataattatttagcttctcccgatgatatttatttatca
acatcacaaatcagattatttggtcttaagaccggagatactgtaaaaggagtagttcgt
cctccaaaagaaggagagaagtttttcccccttgttcgtgtacttaaaattaatggtcac
gatccgcaagttgttcgcgacagagtttcttttgaacatcttaccccggtttttccttct
gaaaaattcaaattagccgaaaaaggcagttcagtttcaacccgtattatcgacttattt
tctccaataggaaaaggacagcgtggtatgattgtcgctcagcctaaaacgggaaagaca
atgttactaaaagacattgcaaacgcaatcgcagccaaccatcctgaagtatatcttatt
gttcttttgattgatgaacgtcctgaagaggttaccgatatgcaacgcagtgtaagagga
gaagttattgcttctacttttgacagagaaccacaagaacacgtgaagattgctaatatc
gttcttgaaaaagcaaaacgtttggtagaatgcggacacgatgtggttattttactggat
tctattacccgtttggcaagagcttataatacagttcaacctgcttcaggtaaagtttta
agtggaggtgttgatgccaatgcattgcaaaaaccaaaacgtttctttggagctgcaaga
aatgtagaaaacggaggttcgttaagtatcatcgcaacagcattgaccgaaacaggttct
aaaatggatgaggtgatctttgaagaatttaaaggtaccggtaacatggaacttcaattg
gatcgtaaaattgccaacaaacgtattttccctgctattgatcttacttcgtcaagtact
cgtcgtgatgatttattactggatgagaaaacattacaaagaatgtggattatgcgtaaa
tatttgtctgatatgaatcctgtagaatctatggatttcgtaaacgaccgtttcaagaaa
accagaaacaatgaagagtttttgatttctatgaatgactag
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