Flavobacterium collinsii: TRV642_4797
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Entry
TRV642_4797 CDS
T08703
Name
(GenBank) MiaB family protein, possibly involved in tRNA or rRNA modification
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
fcs
Flavobacterium collinsii
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fcs03016
]
TRV642_4797
Enzymes [BR:
fcs01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
TRV642_4797
Transfer RNA biogenesis [BR:
fcs03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
TRV642_4797
Prokaryotic type
Methylthiotransferases
TRV642_4797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TPP_enzyme_C
Motif
Other DBs
NCBI-ProteinID:
CAI2769421
UniProt:
A0A9W4TJY2
LinkDB
All DBs
Position
TRV642:complement(5533364..5534698)
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AA seq
444 aa
AA seq
DB search
MENRKKVAFYTLGCKLNFSETSTIARNFNDEGFDRVDFEEIADIYVINTCSVTENADKQF
KQVVKKAMKLNEKAFVAAVGCYAQLKPEELASVDGVDLVLGATEKFKITDYIHDLSKNDM
GEVHSCEIAEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDALENVLQ
NAKEISAQNIKEIVLTGVNIGDYGKGEFGNKKHEHTFLELVQALDKVDGIERLRISSIEP
NLLKNETIEFVSTSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYTERVNKIREVMPHAC
IGVDVIVGFPGETDEHFLETYHFLNEMDISYLHVFTYSERDNTEAANMPGIVPANVRAKR
SKMLRGLSVKKRRAFYESQLGSNRTVLFESENKEGYIHGFTENYVKVKTPWNPELVNTLQ
EINLTKIDEDGSVRLEFLNKLAEA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagaaaaaaagttgccttttatacacttggttgtaaactgaatttttcagag
acttcaactattgcccgaaactttaacgacgaaggttttgatcgtgttgattttgaggaa
atagcagatatctatgtcatcaatacctgttctgttacagagaatgccgataaacagttt
aagcaggtggtaaaaaaagcaatgaagcttaatgaaaaagctttcgtagcggcagtaggc
tgttatgcccagttaaaaccggaggaattagcgtctgtggatggagttgatttggttttg
ggagcaacagaaaaatttaagattaccgattatattcacgatttgagcaagaatgacatg
ggtgaagtacactcctgtgaaattgccgaagctgatttttatgtgggaagttattctatt
ggagatcgtacccgtgctttcctgaaagttcaggacggttgtgattataaatgtacctat
tgtaccattccgttagcaagaggaatttcgagaagtgatgctttggaaaatgtattgcaa
aatgcgaaggaaatctcggctcagaatattaaagaaattgttttaaccggagttaatatt
ggtgattacgggaaaggggagtttggaaataaaaaacacgagcatacctttcttgaactg
gttcaggctttggataaggttgacggaattgagcgtttgcgaatttcatctatcgagccc
aatttgttgaaaaatgaaacgattgaatttgtttcaacaagtcgaacttttgtaccgcat
tttcatatcccgttgcaatccggaagtaatgatattttgaaattgatgaaacgccgttat
ttgcgtgaagtttatactgaacgtgtaaataaaattcgtgaagtaatgcctcatgcttgt
ataggtgtcgatgttattgttggttttccgggtgaaacagatgagcactttttagaaacc
tatcattttcttaacgaaatggatatttcgtatttacacgtattcacttattcggaaaga
gataacacagaagctgcaaacatgccaggaattgttccggcaaatgtaagagcgaaacgc
agtaaaatgttacgcggattatcggttaaaaaacgccgtgctttttatgaaagtcagtta
ggatctaacagaactgttttgttcgaaagcgaaaataaagaaggatatattcatggtttt
acagagaattatgtaaaagtaaaaacaccctggaatccagaattggtcaataccttacaa
gaaataaacctgactaaaattgacgaagacggaagtgttcgtctcgagtttttgaataaa
ctggcagaggcttaa
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