Fundicoccus culcitae: NRE15_04480
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Entry
NRE15_04480 CDS
T09401
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fct
Fundicoccus culcitae
Brite
KEGG Orthology (KO) [BR:
fct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fct03009
]
NRE15_04480 (rlmD)
Enzymes [BR:
fct01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NRE15_04480 (rlmD)
Ribosome biogenesis [BR:
fct03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NRE15_04480 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_15
Methyltransf_25
PCMT
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
UUX34907
LinkDB
All DBs
Position
complement(951400..952803)
Genome browser
AA seq
467 aa
AA seq
DB search
MQKKIYPTEVLDVTINYLDDQGRGIVNYVHAPDKGSNGKHLKIVVGKVVAGDKVRVTIPN
AKGRRMAVVEYDELLEAGPSRINDDSILVNEAGGTPLQFMEYAYQLEFKQELVQRYLVEK
GFDKELVQPIIGMENPYRYRNKMELTFGANGELGMHRQGNFRQIIDMEDSMLAPEEMVAV
KQVVSQWQKDFALSGYNKDTKEGLLRNLMMRKSFATGELMVVIFATEKAEALKEAADDLT
ERLSRQFENLASLIWVLNRNIADRTQSEEEMVLFGRDYINDELHGYHYRIWHDTFFQANP
VQAEKLVELALEFADVNKDMRTLDLFCGVGTFSLPFAARSKELAGIEIVESSILSARRNA
EDNGLDNTFFMVSDARSGLKELKEVWGQPDLLLLDPPRSGAGGKVMRSIGRFGTEKVVYV
SCNPKSLAEDLVWLREFGYELKVVQPVDQFPHTVHVETVVLMQKVKG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaaatatatccaacagaagttttggatgtgacgattaattatttggatgat
caaggacgtggaatagtcaattatgttcatgcaccagataaaggctccaacgggaaacat
ttgaaaattgtagtcgggaaggtggtagctggcgataaagtacgggtgacgataccgaat
gccaaggggcgacggatggctgtcgtggaatatgatgaattgttagaagcaggaccgagt
cggattaatgatgatagtatcttagttaatgaagccggtgggacacccttacagtttatg
gaatatgcgtatcaactagaatttaagcaagagttggtgcagaggtatttagttgaaaag
gggtttgacaaggaattagtgcaaccgattattgggatggaaaatccgtatcgctatcgc
aataagatggagttgacgtttggggcaaatggggaattggggatgcatcgccaaggaaat
tttcgccaaattattgatatggaagactcgatgttggcacccgaagagatggtggcggtt
aagcaggttgtgagtcagtggcaaaaagactttgcgttgagtggttataataaggacact
aaggaaggtttgttgcggaatttaatgatgcgcaagtcctttgcgacaggtgagttgatg
gttgtgatttttgcaactgaaaaagccgaagctttgaaagaggctgcggatgatttaact
gagcgcttgagcaggcaatttgaaaatctagctagtttgatttgggttttaaatcgcaat
attgcagatagaacgcagtctgaagaagagatggttttgtttggtcgcgattatattaat
gatgaattgcatgggtatcactatcgaatttggcatgatactttttttcaagctaatcca
gtgcaagctgagaagctagtggagttggcattagaatttgcggatgtaaacaaagacatg
cgtacattggatttgttttgtggggttgggacattctctttgccttttgcagcgcggtct
aaagaattagcggggattgagattgttgaatcttccatattgtcagctagacgaaatgca
gaagataacggtttggataatacgttttttatggttagtgatgcacgtagtggcttaaaa
gagttgaaagaagtctggggtcaaccagacttgttgttacttgatccacccaggagtggt
gctggtggtaaagtgatgcggagtattgggcgatttggaacagagaaggttgtctatgtg
tcatgtaatccaaagagcttggcggaggatttggtttggttgcgtgagtttgggtatgag
ttaaaggttgtgcagccggtggatcaatttcctcatacggtgcatgttgagacggtagta
ttgatgcaaaaggtaaaagggtaa
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