Fundicoccus culcitae: NRE15_04755
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Entry
NRE15_04755 CDS
T09401
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fct
Fundicoccus culcitae
Brite
KEGG Orthology (KO) [BR:
fct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fct03009
]
NRE15_04755 (rlmD)
Enzymes [BR:
fct01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NRE15_04755 (rlmD)
Ribosome biogenesis [BR:
fct03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NRE15_04755 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
TRM
RrnaAD
PCMT
N6_Mtase
Methyltrans_SAM
Methyltransf_4
Ubie_methyltran
Methyltransf_23
ComR_TPR
Motif
Other DBs
NCBI-ProteinID:
UUX35463
LinkDB
All DBs
Position
complement(1006157..1007518)
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AA seq
453 aa
AA seq
DB search
MKNLSKNQILKSSVLDLTSQGEGVVKIDHFPIFVEGALPGETIEFKIVKLGKKFGYGRLL
KIIQASPHRVEAKDDVGRQIGTMTLQHLEYSEQLKFKQKLVKDAFERIGKFSQLTIHPTI
GMEKPWEYRNKAQIPVRQINNQLETGFFRKNSHDLIPIENYYIQHPVIDQTILTVRNILR
QLHISAYNEESHTGLVRHIIVKRGHYTEEIMVVFVLNGKKMLHEQALVQAMVDQIPHLVS
IVANFQTKETNVIMGRENSVLWGQAFYEDEMLGLRFKISAQSFYQVNTPQAERLYQTAID
YAQLSGTETVLDAYCGIGSISLALAQSAKQVYAMEVVAEAIAMAKENARLNQIENVSFEV
GKAEDVLPNWQKEGIHFDVAVVDPPRKGLDQQFIQTLTELAPQRIVYVSCNPATCARDCR
LIADAGYTIDEIQPVDLFGQTVHTEVVVKLSQP
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatttatcaaaaaatcaaatattgaaaagttctgtcttggatttaacttctcaa
ggtgaaggggtcgtaaaaatcgatcatttccctatttttgttgaaggggctttaccagga
gaaacgattgaatttaaaattgtaaaattaggtaaaaaatttggctacggtagattgctg
aaaattattcaagcaagtccacatcgcgttgaggccaaagacgatgtaggaagacaaata
gggacgatgaccctgcaacatcttgagtatagtgagcaactgaaatttaaacaaaaactg
gttaaggatgcctttgaacggattggaaaatttagccaactaacgattcacccgaccatt
ggtatggaaaagccttgggaatatcgcaataaagcccaaatccccgttcgccaaataaat
aaccaactagaaacaggttttttcagaaaaaatagccacgatctgatacccattgaaaat
tactatattcaacatccggtcattgaccaaacaattttaactgtacggaatattttaaga
cagctacatatctctgcctataacgaagaaagccatacgggcttagtccgtcatattatt
gttaaaagaggtcattatacggaagaaataatggttgtattcgttttaaacggcaaaaaa
atgcttcatgaacaagcccttgttcaagccatggttgaccaaattccccatttagtcagc
attgttgctaattttcaaaccaaggaaacaaacgtgattatggggcgtgaaaacagtgtt
ttatggggacaagccttttatgaagatgagatgctgggtttacgatttaaaatttcggca
caatctttttatcaggtaaatacgccgcaagcggaacgcttatatcaaacagcgattgat
tatgcgcaattaagtgggactgagacagtgttagatgcgtattgcgggattgggagtatt
agtttagctttagcccagtcggctaaacaggtttatgccatggaagtcgtcgctgaagcc
atagcgatggctaaagaaaatgctcgtttaaatcaaattgaaaatgttagttttgaagtc
ggtaaagccgaagatgttttacctaattggcaaaaagaaggcattcattttgatgttgcc
gtcgttgatcccccgcgtaagggcttagatcagcagttcattcaaacgttaactgaatta
gccccgcagcggatcgtttatgtttcttgcaatccggcaacttgtgcgcgtgattgccgc
ctaatcgctgacgccggctacaccattgatgaaattcaacccgtcgatttatttggtcaa
accgtccatacggaagtggtggttaaattaagtcaaccataa
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