Fundicoccus culcitae: NRE15_08125
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Entry
NRE15_08125 CDS
T09401
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fct
Fundicoccus culcitae
Pathway
fct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NRE15_08125 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fct03400
]
NRE15_08125 (mfd)
Enzymes [BR:
fct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NRE15_08125 (mfd)
DNA repair and recombination proteins [BR:
fct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NRE15_08125 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
UUX35491
LinkDB
All DBs
Position
complement(1789989..1793477)
Genome browser
AA seq
1162 aa
AA seq
DB search
MQNQQAQLVTGLDGSARAVLLAQLFEADPKQFIIVVPIPMVLVQLYEDLLNLLPEVPVLV
FPAEESPTVEFSVASYDNQAKRIEVLETLDTGKPCIVLTSVAGVRKRLTSFQTWRKEVVE
LSIGFEIEREPLEAKLNLFGYKRQTMVQSPGEYSVRGSIVDFYPLNTEHPVRLDFFDTEL
DSIRLFNSETQQSMENIDRIKLTPIKDLIFPIEEQQSLLPELHKQLNKKLTTINDEGIKL
AVERGMTEQLALLEQGEPLKYPDVYVTLLKYKDHSIIDYAQGELCLVMIEFDKIQQQERL
LADEDQFWLEHETSLGLLMPGMDLRHHAVDLLRNAPFPKIYMSTIQRGFAYITFTELYHY
QYRSMNQFFNQMPLVKTEIDHWLRQDKIIQVVVPTHQRATKVQQLFEENQILHVTIQSNN
KPTLGYVNIIVGQLTNGFELPLEKWVVLTEKELFNQIKRKAPKQQKLTNAERIKSYSELE
VGDFVVHVNHGIGKYTGMETMEINGVHRDLLAVEYQDNSRLLIPVDQIHLIQKYVTSESR
TPKLNKLGGTEWAKTKRKVASKIEDIADELIELYAKRESEKGFAFSADTAEQVEFENAFE
YVETEDQLKSTAEIKKDMEKARPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQVAFLVPT
TILAQQHYNTIIQRFADYPFEIGLLSRFVSRANQNKTIEDLASGLCNIVIGTHRLLSKDV
VFQDLGLLIVDEEQRFGVKHKERLKQLKQSVDVLTLTATPIPRTLHMSMIGVRDLSLIET
PPNNRYPVQTYVLERNEVAIKSAIEREMARGGQVFYLYNRVATIEQRAMELHDLVPEARI
AVAHGQMNELELETVLMEFIQGNYDVLVTTTIIETGVDIPNANTLFIENADHMGLSTLYQ
LRGRVGRTHRIAFAYLMYEPDKQLSEVSEKRLKSIREFTELGSGFKIAMRDLSIRGAGNL
LGKQQSGFIDSIGFDLYSQMLKEAVDIKRGNKRVDQTYKGHHLEWDVAFDAYLPSFYIED
ERQKIALYKSIQNIDSVEAYRDIQEQLIDRFGEFPDEVANLLEVALIRYYAQEAGISMIK
QQGVWVKVTFTPEASQFFVGPNVYEALQDIPTKVKVDWDSELLTVQFLIQGKAVDQWLNY
LKKFAQQANELINQTKESEVSP
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcaacaagctcaattagtcacgggcttggatgggagtgcacgtgctgttttg
cttgctcaattgtttgaagcggatcctaagcaattcattatcgttgttccaatacctatg
gttttggttcaattatatgaagatttactgaacttattacctgaagttccagtattagtt
tttccagctgaggaatcgccgaccgttgagttttcagtcgcttcgtatgacaatcaagcc
aaaagaattgaagttttagaaacgcttgatacaggtaaaccttgtattgttttaacctct
gtggctggggtaaggaagcgtctgacttcttttcaaacatggcgcaaggaagtggttgaa
ctatcgataggttttgagatagagcgagagccattagaagcgaaattaaatttgtttggt
tataaacgccaaacgatggtgcaatcaccgggtgaatatagtgtgcgtggtagtattgtt
gatttttatccattaaatacagaacaccctgtacgactcgatttctttgataccgaattg
gattctattcgattatttaacagtgagacacaacaatcgatggaaaatattgatcgtatt
aaattaactccaattaaagatttaatttttccaattgaagaacaacaatcattattgccg
gaattgcataagcagttaaataagaagttgaccactatcaatgatgagggtattaaacta
gctgtagaacgtggcatgacagagcaattagccttgcttgaacaaggcgaacccttaaag
tatcctgatgtctatgttaccttactaaagtataaggaccattcaatcattgattacgcg
caaggtgaactgtgtctggttatgattgaatttgataaaattcaacaacaggaacgtttg
ttagctgatgaagatcaattttggttagaacatgaaacctcgctaggtctacttatgcca
ggaatggatttgcgacatcatgcggttgacctgctaagaaatgcgccttttccaaaaatt
tatatgtcaaccattcaaagagggtttgcttatataacttttacagaactttatcattat
caataccgtagtatgaatcagtttttcaaccaaatgcctttagtaaaaacggaaatcgat
cattggttaagacaagataaaattattcaagtcgttgtaccgacacatcaacgggcgacg
aaagttcaacaattatttgaagaaaatcagattctgcatgtaacgattcaatcaaataat
aagccaacgcttggctatgttaatatcattgttggacaattaacgaacggctttgaatta
ccgctagaaaaatgggtcgttttaactgaaaaagagctatttaatcaaattaagcgtaaa
gcacctaaacaacaaaaattgaccaatgcggaacggattaagtcatatagtgaacttgaa
gttggggattttgttgtacatgtcaaccatgggattggtaaatatacgggtatggaaacc
atggaaattaatggggtacatcgtgatttgttagcggtggaatatcaggataattctcgt
ttacttattccggttgatcaaattcatttaattcaaaagtatgtcacgtctgaatcaaga
acacccaaattgaataagctaggtggcaccgaatgggcaaaaactaaacgtaaggtagcc
agtaaaattgaagatattgcggatgaattgattgaactatatgctaaacgtgaaagtgaa
aaaggttttgcttttagcgcagacacggcagaacaagtcgaatttgaaaatgcttttgaa
tatgttgaaacagaagatcaattaaagagcacggccgaaatcaaaaaagatatggaaaaa
gcacgaccaatggaccgccttttagtcggggatgttggttacggaaaaacggaagtggct
atgcgggcgatttttaaagctgttatggatgggaaacaagtagcctttttagtgccaaca
acgattttggctcaacaacattacaatacaattattcaacgttttgccgattatccattt
gaaatcggcttgttgagtcgctttgttagccgagcaaatcaaaataaaaccattgaggat
ttagcttctggcttatgtaatattgtcattggtactcatcgcttattatctaaagatgtt
gtttttcaagatttaggtctcttgattgtcgatgaagagcaacggtttggtgttaaacat
aaggaacggttaaaacaattgaaacaaagcgtggatgtactgacactaaccgcaacacca
attccacgaacactgcatatgtcgatgattggtgtgcgtgatttatccttgattgagacg
ccaccgaacaaccgttatccggtacaaacatatgtgttggaacgaaatgaagtggctatt
aaatcagcgattgaaagagaaatggctagagggggacaagttttttacctatataatcgt
gtggcaaccattgaacaacgggcgatggaattgcatgacttagtcccagaagcacgtatt
gccgtagctcatggtcagatgaatgaattagagttagaaactgttttaatggaatttatt
caaggtaattatgatgtgctagtcacaacaacaatcatcgaaaccggtgtggatatcccg
aatgccaatacattatttattgaaaatgcggaccatatgggcttgtcaactttgtatcag
ttacgtggtagggttggtagaacgcatcggattgcttttgcttatttaatgtatgaacct
gacaaacaattaagtgaagtgagtgaaaaacgtttgaagtctattcgggaatttaccgag
ctaggatctggatttaaaattgcgatgcgcgatctatctattcgtggcgcaggtaatttg
cttgggaaacaacagtctggttttattgattccattggttttgacttatactcacaaatg
ttgaaagaagcggtcgatattaaacgtggcaataagcgcgttgatcaaacctataaagga
caccatttggaatgggatgtcgcctttgatgcttacttaccatcgttttatattgaagat
gaaagacaaaagattgctttgtataaatccattcaaaatattgactccgtcgaggcatac
cgagatattcaagaacaattaattgatcggtttggtgaatttcctgacgaagttgccaac
ttattagaagtggctttaattagatattatgctcaagaagcaggtatatcaatgattaaa
caacaaggtgtttgggttaaagtaacctttacaccggaagccagtcaatttttcgttggt
ccaaatgtctatgaagccttacaagacattccaactaaagtaaaagtggattgggatagt
gagcttttaaccgtgcagtttttaattcaggggaaagctgtcgaccaatggctaaattat
ttgaaaaaatttgctcaacaggccaatgaattaattaatcagacaaaggaaagtgaggtg
agcccatga
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