Fundicoccus culcitae: NRE15_08825
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Entry
NRE15_08825 CDS
T09401
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fct
Fundicoccus culcitae
Pathway
fct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NRE15_08825 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fct03021
]
NRE15_08825 (rpoC)
03400 DNA repair and recombination proteins [BR:
fct03400
]
NRE15_08825 (rpoC)
Enzymes [BR:
fct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NRE15_08825 (rpoC)
Transcription machinery [BR:
fct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NRE15_08825 (rpoC)
DNA repair and recombination proteins [BR:
fct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NRE15_08825 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UUX33014
LinkDB
All DBs
Position
complement(1946880..1950506)
Genome browser
AA seq
1208 aa
AA seq
DB search
MIDVNKFETMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKLKRVRYKGRVCDRCGVEVTRAKVRRERMGHIELAAPVTHVWYFKGIPSRMGLILDL
SPRLLEEVIYFASYIVIDPGDTPLEPKSLLSEFEYREKKREYGNRFNAKMGAEAIKELLQ
AVDLKGEVAELKETLKTATGQKRSRAIRRLDILDAFLESGNRPEWMILDALPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRAVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGIPKE
MAVELFKPFVMKELVEREIATNIKNAKRMIEVQDDAIWPVVEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVDGRAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEEAGRTGEGLILSSVEEGEIAYQSGYVHLHTRVAIP
AKALPGKPFTQWQKDKMMVTTIGKLLFNEIMPIEFPYLNEPSTENLTNQTPDKYFLDKGA
DIPKVIADMELVKPFKKKDLGNIIAEVFKRFHITETSKMLDRMKDLGYKYSTRAGITVGV
ADVLNLDTKQGILDEAHARVDNITKQYRRGLITDDERYESVIRTWDQAKDKIQDDLQKKL
PRLNPIFMMSDSGARGNISNFTQLAGMRGNMAAPNGKIIELTITSNFREGLNVQEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREDDCGTDKGVFVSEIADGNSIIESLE
ERLLGRYIQKTVKHPETGEVLASANDFVTEDLAAKIVNAGVKEVSIRSVFTCDTDHGVCK
KCYGRNLATGTQVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGGSDITQGLPRVQEI
FEARHPKGQATITEVSGVIESIEEKASDRSRDVTVSGSVDTRTYNIPIQSRLQVVVGDEV
VRGQALTEGSIDPKELLQVTDVITVENYLLREVQSVYRSQGVEIGDKHIEVMVRQMLQKV
RVMDPGSTDILPGALMDVADFTKANLPAIKGGETPATARPVLLGITKAALETNSFISAAS
FQETTRVLTDAAIRGKKDVLLGLKENVTIGKLIPAGTGMKRYRDIETNIENPPHPDEVIL
EDKKQQLK
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataaattcgaaacgatgcaaatcggacttgcgtctcccgaaaaaatt
cgtagttggtcttatggtgaagttaagaaaccagaaactattaactaccgaactttaaaa
ccggaaaaagatggtctcttttgtgaacgaatttttggtccaactaaagactgggaatgt
agttgtgggaagttaaaacgcgttcgttataaaggtcgtgtttgtgatcgctgtggtgtt
gaagtaacgcgtgcaaaagtgcgtcgtgaaagaatggggcatattgaattagctgctcca
gttactcatgtgtggtacttcaaaggtattccaagtagaatgggtctaattttagattta
agtccacgtcttttagaagaagttatttattttgcttcatatattgtaattgatccaggt
gatactccgttagagcctaaatcattgttatctgaatttgaataccgtgagaaaaaacgt
gaatacggtaatcgtttcaatgctaaaatgggtgctgaagcgattaaagagttattgcaa
gccgttgatttaaaaggtgaggttgctgagcttaaagaaacattaaaaacagcgacaggc
caaaaacgtagccgcgctatccgacgtttggatattctagatgctttcctagaatccggc
aatcgaccagaatggatgattttagatgcccttccagtcattccgcctgatttacgtcca
atggtacaattagaaggtggccgttttgcgactagtgatttgaatgatttatatcgtcgt
gtcattaaccgtaataatcgtttaaaacgactacttgatttaggtgcaccaaacattatc
gttcaaaatgaaaaacggatgttacaggaagcggttgatgcgttaattgataatggtcga
cgtggtcgtgccgttgtaggtccaggtaaccgtccgttaaaatcattatcccatatgtta
aaagggaaacaaggtcgtttccgtcaaaacttactcggaaaacgggtagattactctggt
cgttctgttatcgttgtgggtcctaacttgaaaatgtatcaatgtggtattcctaaggaa
atggcggtagagttgttcaaacctttcgtgatgaaagagttggttgaacgtgagattgca
actaacattaaaaatgctaaacgtatgattgaagtacaagatgatgcgatttggccagtt
gttgaagatgttatcaaagagcatcccgttctacttaaccgagcacctactttgcaccgc
ctaggtattcaagcttttgaaccaaccttagtcgatggacgtgcgattcgtcttcaccca
ttagtatgtgaagcttataatgccgactttgatggggatcaaatggctgtacatgtgcct
ttatcagaagaagcacaggctgaagcacgtattttaatgctagccgcacaaaatatttta
aaccctaaagatgggaaaccagtggtaaccccttcacaagatatggttttaggtaactat
tatttaacattagaagaagctggtcgtacaggtgaagggttgattttaagtagtgttgaa
gaaggagaaattgcttatcaaagtggttatgttcatcttcatacccgtgtagcaattcct
gctaaagctttaccagggaaaccatttacccaatggcaaaaagataaaatgatggtgaca
acaattggtaaacttttatttaacgaaattatgccaattgagttcccttatttaaatgag
ccatcgactgaaaacttaaccaatcaaacacccgataaatatttcttagataaaggggct
gacattccaaaagtcattgcagacatggaattagtcaaaccgtttaagaaaaaagactta
ggaaatatcatcgctgaagtcttcaaacgattccatattacagaaacatctaaaatgtta
gaccgtatgaaggatttaggttataaatactcaacgcgtgctggtattacagtaggagtg
gctgacgtattaaatctagatacaaaacaaggaattctcgatgaagcacatgcgcgtgtt
gataatataaccaaacaatatcgtcgtggcttaattactgatgatgaacgttatgaaagt
gttattcgtacatgggatcaagcgaaagataagattcaagatgatctgcagaaaaaattg
ccgcgtctaaacccaatctttatgatgtccgattcaggagctcggggtaatatctctaac
tttactcaattagctggaatgcgtggtaacatggcggcccctaatggtaaaattatcgaa
ttgacaattacttcaaacttccgtgaagggcttaatgtacaagaaatgtttatctctacg
cacggtgcgcgtaaagggatgaccgatacagctcttaagacagctgactcaggttaccta
acacgtcgtttagttgatgtggctcaagatgttattgtacgtgaagatgattgcggtaca
gataaaggggtttttgtttctgaaatagcagacggcaacagcatcattgaatcccttgaa
gaacgtttgttaggccgttatattcaaaaaacggttaaacatcctgaaacgggagaagta
ctcgcttcagctaatgactttgttacagaagatttagccgcaaaaattgttaatgcgggt
gttaaagaagtgtcgattcggtctgtctttacctgtgatactgatcatggtgtatgtaag
aaatgttatggccgtaaccttgctacaggtacacaagtagaagttggggaagctgtagga
acgattgcagctcaatcaattggtgagcctggtacacaattaaccatgcgtaccttccat
acaggtggggtagcaggtggtagtgatattacccaagggttaccacgtgttcaagaaata
tttgaagcacgtcatccaaaaggtcaagcaaccatcacagaagtatccggggtaattgag
tcgattgaagaaaaagcctctgatcgctctagagatgttactgtttcaggttctgtggac
acacgtacctacaatattccgattcaatcacgcttacaagtcgttgttggggatgaggta
gtccgtggacaagctttgacagaaggatctattgaccctaaagaattgttacaagtaacg
gatgtgattacggtagaaaattacctattacgcgaagtacaatctgtctaccgtagccaa
ggggtagaaattggtgataaacatattgaagtaatggtccgtcaaatgttacaaaaagtt
cgtgtcatggacccaggctcaactgacatcttaccaggtgctttaatggatgtggccgac
tttacgaaagccaatttaccagccattaaaggtggcgaaacaccagctactgcgcgacca
gtcttgttaggtattaccaaagcagctctagaaacaaactcatttatttcagctgcatcc
ttccaagaaacaacacgtgtattaactgatgctgccattcgcggtaaaaaagatgtgtta
ttaggattaaaagaaaatgttacgataggtaaattaattccagcaggtactggaatgaaa
cgttaccgcgacatagaaacaaatatcgaaaatccaccacatccagatgaagttatctta
gaagataaaaaacaacaacttaaatag
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