Fundicoccus culcitae: NRE15_09960
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Entry
NRE15_09960 CDS
T09401
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fct
Fundicoccus culcitae
Pathway
fct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NRE15_09960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fct03019
]
NRE15_09960
03009 Ribosome biogenesis [BR:
fct03009
]
NRE15_09960
Enzymes [BR:
fct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NRE15_09960
Messenger RNA biogenesis [BR:
fct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NRE15_09960
Ribosome biogenesis [BR:
fct03009
]
Prokaryotic type
rRNA helicases
NRE15_09960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
MRS2-like
CobT
Cas3-like_C_2
Urease_gamma
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UUX33225
LinkDB
All DBs
Position
2185008..2186549
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AA seq
513 aa
AA seq
DB search
MKFNELKINNKLLASLSEMGFEEPTPIQQQAIPLALEGNDLIGQAQTGTGKTAAFGIPML
NKLDNNLDGIQGLVVAPTRELAIQVQDELFRLGKGQRARVYVVYGGAPIGQQIERIKRNK
PQIIVGTPGRILDLIRRGVLRLSELQTLVLDEADEMLNMGFYEDVFEIIENTPSTRQTML
FSATMPPAIRQLSNKILKDPKHVKIEAKEMTADLIDQYFVKCRDDEKFDILTRLIDVQAP
TQAIIFCRTKKRVDEVGRGLNLRGYNTELIHGDITQQKRTSVINQFRQNQIEILVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGMSTTFVTNNEMPYLRTIETLIR
KQMTPLRPPTDQEAKQGQVQQIVDQLNEKIDNHQADDLMNVAKQMLEHYDATELVAALLS
EVIVTNNDVAVTISPQKPLPNADRKENKRRSASNSSSQRSRNNRSGDGGGGNRNYNSRSK
NQSNKSAKAGKGSNPRQSNTKTKNFKVRQKGRG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaatgaattaaaaataaataataaactacttgcctctcttagcgaaatgggc
tttgaggaacctacaccaattcaacaacaagctatccctttggccttggaaggcaatgac
ctaattggtcaagcccaaacaggaacaggtaaaaccgccgcttttgggattcctatgtta
aacaaattagacaataatcttgatgggattcaaggtttagttgttgcacctacacgtgaa
ttagccattcaagtacaagatgaactatttcgtttaggtaaaggccaacgtgcacgtgtc
tatgttgtttacggaggtgcaccaattggtcaacaaattgaacgaattaagcgcaataag
ccacaaattattgtgggaacacctggacgtattttagatttgattcgccggggcgtttta
cgtttaagcgaattacaaaccttagtcttggatgaagcggatgaaatgttaaacatgggc
ttttatgaagatgtatttgaaattattgaaaatacaccgtcaacacgccaaaccatgtta
ttttcagccaccatgccaccagcgattcgtcaactaagcaacaagattttgaaagatcca
aaacatgttaaaattgaagccaaagaaatgacggcagacttaatcgatcaatattttgtt
aaatgtcgtgatgatgaaaaatttgatatcttaacacgtttaatcgatgttcaagctccg
acccaagccattattttctgccgcacgaaaaaacgggtagatgaagttggccgtggttta
aacttacgtggctataacaccgaattaatccatggtgatattacgcaacaaaaacggacc
agtgtgattaatcaattccgacaaaaccaaattgaaattttagtagctacagacgtggcg
gcccgtggcttggacatttcaggggtaacacacgtttataactatgatatccctcaagac
cctgaaagctatgttcaccgtatcggtcggacaggtcgtgccgggaatgaaggtatgtca
acgacttttgtaaccaataatgaaatgccatacttgcgtacgattgaaacactcattcgt
aaacaaatgacaccattacgtccacctaccgatcaagaagctaaacaaggtcaagtgcaa
caaattgtggatcaattgaatgaaaaaattgataatcatcaagccgacgatttaatgaac
gtggcgaaacaaatgttagaacattatgacgccactgaattagtcgctgctttactaagt
gaagtgattgtaaccaataacgacgttgccgttaccatctcaccacaaaaaccattgcct
aatgcagaccgcaaagaaaacaaacgccgatcagcttcaaactcaagctcacaacgttca
cgcaacaaccgcagtggcgatggcggcgggggcaaccgtaattacaactcacggagcaaa
aaccaaagtaacaaatcagctaaagctggcaaaggtagcaacccacgccaaagcaacacg
aaaaccaaaaactttaaagtacgccaaaaaggcagaggctaa
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