Flavobacterium cerinum: NOX80_00145
Help
Entry
NOX80_00145 CDS
T09039
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fcu
Flavobacterium cerinum
Pathway
fcu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NOX80_00145 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcu03021
]
NOX80_00145 (rpoC)
03400 DNA repair and recombination proteins [BR:
fcu03400
]
NOX80_00145 (rpoC)
Enzymes [BR:
fcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NOX80_00145 (rpoC)
Transcription machinery [BR:
fcu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NOX80_00145 (rpoC)
DNA repair and recombination proteins [BR:
fcu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NOX80_00145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UUC45643
LinkDB
All DBs
Position
complement(45578..49876)
Genome browser
AA seq
1432 aa
AA seq
DB search
MTRLKDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYILGLPSKKLDMIIYYERYVVIQPGIAKGPDGDTLNTLDFLTEEEYLNIQDSLPMENQY
LDDTDPNKFIAKMGAECIMDLLARIDLDALSYQLRHAANNETSKQRKTEALKRLQVVESF
REANNNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTETH
KILGEGLTFYSAEEVNIALNEGKLELNARVKIRAKDFNENGELVYKIIQTTAGRVLFNEV
VPEAAGYINEVLTKKSLRDIIGKILSVTDVPTTAAFLDNMKDMGYRFAFKGGLSFSLGDI
KIPDQKQDLIADANNQVEAISMNYNMGLITNNERYNQVIDVWTSTNALLTELAMKNIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGVEVTALKKNE
EVVESLGERILGRVALQDVINPLTSEVLVAAGEEITEAIVKAIDASPIEKVDVRSPLTCE
AGKGICAKCYGRNLATGKMTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGNISEESS
IITKFRGRLEIEDLKTVKGEDNEGNTTDIVISRSTELKLIDETTGIVLNTHNIPYGSSIF
VKDGDIVEKGTTICKWDPYNGVIISEFTGKVAYEDIEQGQTFMVEIDEQTGFQEKVISEG
RNKKLIPTLLIYGKDGELIRSYNLPVGAHLMVDDGEKIKAGKILVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVVESKFGELKKYLVKLSNQILV
QENDYVRAGMPLSDGAITPDDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVQIQDPGDTLFLEDQLAHTSDFIVENDKLYGMKVVEDAGDSDNLKAGQIISPREL
RDENSILKRNDRNLVIARDVVPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDGLEGLKENVIVGHRIPAGTGMRDYDNIIVGSKEEFNELMAAKEEFNY
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgacgagattaaaagataaaaataccgttaaaagatttaacaaaatttcgataggtctt
gcttctccggaatctattctggctgaatcaagaggtgaggttttaaaaccggaaaccatc
aactatcgtacccataaaccagagcgtgacggtcttttctgtgagcgaattttcggtcca
gtaaaagattttgaatgtgcttgtggaaaatacaaaagaatccgttataaaggaatcgtt
tgtgaccgttgtggagttgaagtaactgagaaaaaagtacgtagagacagagtaggtcat
attaaccttgttgtgccaattgcacacatctggtatttccgttcccttccgaataaaatc
ggatatatcttaggattaccttctaaaaagctggatatgattatttactacgaaagatac
gtagtaattcagccgggtattgcaaaaggaccggacggagacacattaaatactttggat
ttcttaactgaagaagagtacctgaatattcaggacagccttccgatggagaaccaatat
ttagacgataccgatccgaacaaattcatcgctaagatgggtgcggaatgtatcatggat
ttattagcccgtatcgatttggatgctttgtcataccaattgcgtcacgcagcaaataat
gaaacgtctaaacaacgtaaaacagaagctttaaaaagattacaggttgtagaatcattc
cgtgaagcaaacaataaccgtgagaatcgtccggaatggatgatcttaaaagtaatcccg
gttatcccgccggaattacgtccgttagtgccgcttgatggtggacgttttgcaacttcc
gatttgaatgacctttacagacgtgtaatcatccgtaacaaccgtttaaaacgattaatg
gagattaaagcaccggaagtaatcttgagaaatgaaaaacgtatgttacaggaatctgtt
gactcgttattcgataacacaagaaaagcatctgctgttaagacagaatcaaacagaccg
ttgaaatcactttcggattccttaaaaggtaaacaaggtcgtttccgtcagaacttatta
ggtaaacgtgtggattattcagcgcgttccgtaattgtcgttggaccggaaatgaaattg
ttcgaatgtggtcttccgaaagatatggctgctgaactgtacaaaccattcgttattcgt
aagttaatcgaaagaggaatcgttaaaacagtgaagtcggctaagaaaattatcgacaaa
aaagagccggtagtatgggatatccttgaaaacgtaattaaaggacacccggtattacta
aaccgtgctcctactttgcaccgtttgggtatccaggctttccagccgaaattgattgaa
ggtaaagcgatccagttacacccgttagtgtgtacggcgtttaatgccgatttcgatggt
gaccagatggcggttcacttaccgttaggaccggaggctattttagaagcacaattgtta
atgttggcttctcacaatatccttaaccctgcgaacggagcaccgattacggtaccttct
caggacatggttttgggtctttattatatgaccaaagaacgtttgtcaaccgaaacacat
aaaattttaggtgaaggattaactttctattctgctgaagaagtaaatattgctttgaat
gaaggaaaattagaattaaatgctcgtgtgaaaatccgtgcaaaagattttaatgaaaac
ggagagttagtatataaaatcatccagacaactgccggtagagtattatttaacgaagta
gtaccggaagcagctggatatatcaatgaagtattaactaagaaaagtttaagagatatt
atcggtaagattttaagtgttactgatgtacctacaacagctgccttcttggataatatg
aaagatatgggataccgattcgctttcaaaggaggattatcgttctctttgggtgatatc
aaaatcccggatcaaaaacaagatctgatcgctgatgcaaacaatcaggttgaagcaatt
tccatgaactataacatgggtcttatcacaaacaacgaacgttacaatcaggtaattgac
gtgtggacttcaacaaatgcattattgacagagttagcaatgaaaaacattagagaagac
cagcaaggtttcaactctgtgtatatgatgcttgactctggagcgaggggatcgaaagag
cagatccgtcagttaaccggtatgcgtggattgatggcgaagcctaaaaaatcaactgcc
ggtggtggtgaaattattgaaaacccgatcttatcgaactttaaagaaggtctttcgatc
ttagagtactttatctcgacgcacggtgcccgtaaaggtcttgcggatacggctcttaaa
acggcggatgccgggtacttaaccagaaggttacacgatgtatctcaggatgtaattgtg
aactcggtggattgtggtacattaagaggtgtagaggttactgctttaaagaaaaacgaa
gaggttgtagaatcattaggagaaagaatcttaggtcgtgtggcactacaggatgtaatc
aacccgctaacaagcgaagtattggttgcagccggagaagaaattacagaagctattgtt
aaagcaatcgatgcttctccaattgaaaaagtagatgttcgttcgccgttaacttgtgag
gcaggaaaaggaatctgtgcgaaatgttacggaagaaacctggcaaccggaaaaatgacc
caaaaaggtgaagcagtcggagtaatcgctgcacaatcaattggtgagccgggtacacag
ttaacactacgtacattccacgtgggaggtaccgcaggtaacatctctgaagaatcaagc
attatcacgaaattccgcggaagattagagatcgaagatttaaaaacagttaaaggtgaa
gataacgaaggtaatactactgatatcgtaatctcacgttcaacagaattgaaattgatc
gacgaaacaaccggaatcgtattgaatacacacaatatcccttatggatcaagcattttt
gtaaaagatggtgatattgtagaaaaaggaacaacaatctgtaaatgggatccgtataac
ggggtaattatttctgagtttaccggtaaagtagcttacgaagatatcgagcaaggacaa
acgttcatggttgaaatcgatgagcaaaccggattccaggaaaaagtaatctctgaagga
agaaataaaaaattaatccctactttattaatctacggaaaagacggagaattgatccgt
tcttacaacttaccggtgggtgcccaccttatggtagatgacggagagaaaattaaagca
ggtaagattttagtaaaaattccacgtcgttcgtctaaagcgggtgatattaccggaggt
ttaccgagaattaccgagttattagaagctcgtaacccatcgaatccggctgtagtttct
gaaatcgacggtgtagtatcttttggaaaaatcaaaagaggtaaccgtgagattgtagta
gaatcgaaattcggagaacttaaaaaataccttgtaaaactttctaatcagattctggta
caagaaaacgattacgtaagagctggtatgccattatcagacggagcaattactccggat
gatattttaagaatccagggaccatctgctgtacaacagtatttagtaaatgagattcag
gaagtataccgtttacaaggggtaaaaattaatgacaagcactttgaagttgtaattcgt
cagatgatgcgtaaagttcagatccaggatccgggagataccttattcctggaagatcaa
ttggctcacaccagcgactttatcgtagaaaatgataagttatacggaatgaaagtggtt
gaagatgcaggtgattcagataatcttaaagcgggacaaatcatttcgcctagagaatta
agagatgaaaactcgatcttgaaacgtaatgacagaaacttggttatagcaagagacgta
gttccggcaacggcaactccgatacttcaaggtattacaagagcgtcattacaaacgaaa
tcgtttatctcggctgcatcgttccaggaaacaacaaaagtattaaacgaagctgcagta
gcaggaaaagttgacggattagaaggattgaaagaaaatgttatcgtaggacacagaatc
cctgccggaaccggtatgagagattacgacaacatcatcgtaggttctaaagaagaattc
aacgaattaatggctgcaaaagaagaatttaattactaa
DBGET
integrated database retrieval system
