Flavobacterium cerinum: NOX80_16940
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Entry
NOX80_16940 CDS
T09039
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcu
Flavobacterium cerinum
Pathway
fcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOX80_16940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcu03019
]
NOX80_16940
03009 Ribosome biogenesis [BR:
fcu03009
]
NOX80_16940
Enzymes [BR:
fcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NOX80_16940
Messenger RNA biogenesis [BR:
fcu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NOX80_16940
Ribosome biogenesis [BR:
fcu03009
]
Prokaryotic type
rRNA helicases
NOX80_16940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UUC45300
LinkDB
All DBs
Position
3747249..3749114
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AA seq
621 aa
AA seq
DB search
MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPLLLEKDTDIVALAQTGTGKTAAFGFP
LIQKIDAENRNTQALILSPTRELCLQITNEIKQYSKYVKGIHTVAVYGGASITEQAKDVK
RGAQIIVATPGRMQDMINRGMVNIKNINFCVLDEADEMLNMGFYDDITAILSDTPEDKST
WLFSATMPQEVARIAREFMRKPLEITVGHKNSGSQNVSHEFYLVNARDRYAALKRLADAN
PDIFSVIFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDSVMKSFRGRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGTSLVIITKSELRKISQIERI
IKTKFEEKPIPSGIEICEIQLFHLANKIKDVEVDHEIDSYLPAIYEVMKDLTKEEVIKKM
VSVEFNRFINYYKKSRDLSAQNAGERREDAGSIPTDGAVRFFINIGSRDNFDWMTLKDFL
RDTLELGRDDLFKVDVKEGFSFFNTDAEHADKVMDVLNNIHLEGRKINVEISKNDGGSNS
RRRDHNGRSGGGDRGRSSSFRGGDRDRDRGPRKERSFGGGRSERKDDFGDRPARNERRSD
RSPRRSEGSSNNTSGRRPRRS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgctactgctggcgattaaagatcta
ggatttgaaaatccgtcggaggtacaggaaaaggcgattcccctattattggaaaaagac
acagacattgttgcgttggcacagaccgggacaggtaagacagctgcgtttggtttcccg
ctgattcaaaaaattgatgctgagaacagaaatactcaggctttaattttatcgccaaca
cgcgaactttgtttacagatcaccaatgagattaaacaatattcaaaatacgttaaagga
attcacactgtagcggtttatggtggtgccagcattaccgaacaagctaaagatgtaaaa
agaggtgctcagattattgtagctactccaggaagaatgcaagacatgattaacagaggt
atggttaacattaagaacattaatttctgtgttcttgatgaggctgacgagatgttaaac
atgggattttatgatgatatcactgctattttatccgataccccggaagataaaagtacc
tggttgttttctgcaaccatgccacaggaagtagcgcgaattgcccgtgaatttatgaga
aagccacttgaaattacagtgggtcataaaaattccggttcgcaaaacgtttctcacgag
ttttatcttgttaatgcccgtgaccgttatgctgctttaaaacgtttagccgatgcaaat
ccggatattttctctgtgattttttgccgaacaaaacgcgatactcaggctgtagctgaa
aaattaattgaagacggatacaatgctgctgctttacacggtgatttgtctcaggcacaa
cgtgacagcgtaatgaaatcattccgtggtcgccagattcaaatgcttgttgcaactgac
gtagctgcacgtggtattgacgttgatgatattacacacgtaatcaactatcagttaccg
gacgaaatcgaaacgtatacacaccgttcaggaagaaccggtcgtgccggaaaatcagga
acttcacttgtaattattactaaaagtgaattgcgtaaaatttcacagatcgagcgtatc
atcaaaactaaatttgaagagaaaccgattccttccggaattgaaatctgcgaaatccag
ttattccacttagctaacaaaatcaaagacgttgaagtagatcacgaaatcgattcttac
cttccggctatttatgaggtaatgaaagaccttacaaaagaagaggtaattaagaaaatg
gtttccgttgaattcaaccgtttcatcaactactataaaaaatcacgcgatttatcagct
caaaatgcaggagaacgtcgcgaagatgccggaagtatcccaactgacggagctgttcgt
ttctttatcaacatcgggtcacgcgataattttgactggatgacgttaaaagatttctta
cgcgacacattggaactaggccgtgatgatttgtttaaagtagatgtaaaagaaggtttc
tcctttttcaatacggatgcagaacatgctgacaaggtaatggacgtattaaacaatatc
catttagaaggtagaaaaatcaacgtagaaatttctaaaaacgacggtggttctaatagc
agacgacgtgatcacaacggacgtagtggtggtggcgacagaggccgctcttcttctttc
cgaggtggtgaccgcgatcgcgacagaggtccgagaaaagaacgtagttttggtggcgga
cgttccgaaagaaaagatgatttcggcgacagaccggcacgaaacgaaagaagatcagac
cgttctccgcgtcgttcagaaggttcttcgaacaacactagcggaagacgcccgagaaga
agctaa
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