Flavobacterium covae: AWN65_03740
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Entry
AWN65_03740 CDS
T08038
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fcv
Flavobacterium covae
Pathway
fcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWN65_03740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcv03019
]
AWN65_03740
Enzymes [BR:
fcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWN65_03740
Messenger RNA biogenesis [BR:
fcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWN65_03740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
Flavi_DEAD
CMS1
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AMA48637
LinkDB
All DBs
Position
854550..855821
Genome browser
AA seq
423 aa
AA seq
DB search
MTFEQFSFHRNIVQSIKEATYIKPTEIQEKAIPIILEEEDLVGCAQTGTGKTAAFAIPIL
NYLIPIVGSFKKRKHIRTLVLAPTRELALQIEESFNKYGKYTNCTTLTIYGGVSQTTQVE
KLKEGIDILIATPGRFLDLNKQGVIDINHLHHLVIDEADLMLDMGFINDVRKITKIAPQN
RQTLLFSATMPIEIREIAEEFLKKPKYIEVKSTIHSSQNITQLVYFVEKTEKKQLLLRVI
KQKELVNTIIFVRTKQGADNLAEFLQKNQLNCDALHGDKSQSARQKVLENFKNKTIDFLI
ATDVASRGIDIDQLPVVLNYDLPNIPETYIHRIGRTGRAGHSGIAISFCGKDEETYWKDI
TRLLKNKVTIEEDHPFPWKSNNSKKNQLNQKKAILKGNIQPKEKSGKKSRKSDNSKKNKK
RWY
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaacagtttagttttcatcgaaatatagtacagtcaataaaggaagcaacc
tatataaaaccgacagaaatacaagaaaaagcaataccaatcattcttgaagaagaagat
ttagtaggttgtgcccaaacaggaacgggaaaaacagccgcttttgcaattcctatccta
aattatttaattcctatagtaggatcttttaaaaaaagaaaacacattcgtacacttgtt
ttagctcccacaagagaattagccttacaaatagaagaaagctttaataaatacggaaaa
tatacaaattgtacaacacttaccatttatggaggtgtatcacaaaccactcaagtagaa
aagttaaaagaaggaatagatatattaattgctaccccaggacgatttttagacctgaat
aaacaaggagtaatagatatcaatcacctacatcatttagttatagatgaagcagattta
atgcttgatatgggatttataaatgacgtaagaaaaataacgaaaatagctcctcagaac
agacaaaccctattgttttctgctacaatgcccatagagattagagaaattgctgaagaa
tttcttaaaaaacctaaatatatagaagttaaatcaaccatacatagtagtcagaacata
acacaattggtttattttgtagaaaaaaccgaaaaaaaacaacttttattgcgagttatt
aagcaaaaagaactcgttaataccataatatttgtaagaacaaaacaaggagcagataat
cttgctgagtttttgcaaaaaaatcaattaaactgtgatgctttgcatggggataaatca
caaagtgcacgccaaaaagtattagaaaattttaaaaataaaacaattgatttcttgata
gccacagatgttgcttcaagaggaattgatatagatcagcttcctgtagttcttaattat
gatttgcccaatattcctgaaacctatattcatagaataggaagaacggggagggcagga
cattcaggtatagcaatttctttttgtggaaaagatgaagaaacatattggaaagatata
accagattattaaagaataaagtaacaatagaagaagatcatccctttccttggaaatca
aataatagtaaaaaaaatcaactaaatcaaaaaaaagccatccttaaaggcaatatccaa
ccaaaggaaaaaagtggaaaaaaatcaaggaagtcagataattctaagaaaaataaaaaa
agatggtattaa
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