Flavobacterium covae: AWN65_09490
Help
Entry
AWN65_09490 CDS
T08038
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fcv
Flavobacterium covae
Pathway
fcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWN65_09490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcv03021
]
AWN65_09490
03019 Messenger RNA biogenesis [BR:
fcv03019
]
AWN65_09490
Transcription machinery [BR:
fcv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AWN65_09490
Messenger RNA biogenesis [BR:
fcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AWN65_09490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA_22
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
AMA49676
LinkDB
All DBs
Position
2137264..2139042
Genome browser
AA seq
592 aa
AA seq
DB search
MFDISVLKEMKLNELQEIAKAAKIKNFKTLKKDDLVYQILDFQASNPEKLTPDANSIPED
SSKPKRTRMVKDKKEASSEPEKVDINQETSFFTEETDEKKTSKKVNNKKVTTNTEEVTEQ
KKDTFVKKNKNQKFPKDKKSITETNEKIIESNLPTEEINTTINLQESQTEETVEIAEISS
DQVNNSTIEPELPPSIESNKHKYNQNPKYKKTTNFREPDYEFEGIIESEGVLEMMPDGYG
FLRSADYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEGEKYFPLVKVLKINGHD
PQVVRDRVSFDHLTPVFPTEKFKLAEKGSSISTRIIDLFSPIGKGQRGMIVAQPKTGKTM
LLKDIANAIAANHPEVYMIVLLIDERPEEVTDMQRSVRAEVVASTFDREPQEHVKIANIV
LEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARN
VENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANRRIFPSVDLTSSSTR
RDDLLLDEKTIQRMWIMRKYLADMNSVEAMEFINDRFKKTRNNEEFLISMND
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttctgtattaaaagaaatgaagctaaatgaattgcaagaaattgcaaaa
gcagcgaaaatcaagaattttaaaactcttaaaaaagacgatttagtttaccaaatactt
gacttccaagcttcaaaccctgaaaaactaacccctgatgcaaatagcatccctgaagat
tcttcaaaacctaaacgaactcgtatggtcaaagacaaaaaagaagcatcatcagaacct
gaaaaagttgatataaatcaagaaacgtccttttttacggaagaaacagatgaaaaaaaa
acatctaaaaaagtaaacaacaagaaggtaacaactaacacagaagaagttacagaacaa
aaaaaggatacttttgtaaaaaagaataaaaaccagaaattccctaaagacaaaaagagt
attactgaaacaaacgaaaagattattgaatctaatcttccaacagaagagataaacact
acaatcaacctccaagaaagccaaacagaagaaactgtagaaatagcggaaatttcatcc
gaccaagtaaacaattctactatagaacctgaattacccccatctattgaatcaaacaaa
cacaagtataaccaaaatcctaaatacaaaaaaacaactaatttcagagaacctgattat
gagtttgaaggtatcatagaaagtgaaggcgtattagaaatgatgcctgacggatatggc
tttttacgttccgctgattacaattatttagcctctcctgatgacatttatttgtcaact
tctcaaattagattatttggtcttaaaacaggtgacacagtaaaaggagttgttcgccca
ccaaaagaaggagaaaaatatttccctttagtaaaagttctaaaaattaatggtcatgac
ccacaagtagtacgagatcgtgtttcctttgaccatttaactcctgtttttcctaccgaa
aaatttaaattagcagaaaaaggtagttctatttctacacgtattatagatttattttcc
cctattggaaaagggcaacgtggtatgatcgtagctcaaccaaaaacaggaaaaaccatg
ttacttaaagatattgctaatgctattgcggcaaatcacccagaagtgtacatgattgta
ctactcatagatgagcgtcccgaagaagttactgatatgcaacgcagtgtgcgagcagaa
gtagttgcttctacatttgatcgcgaaccacaagaacatgtcaagattgccaatatagta
cttgaaaaagcaaaacgtttagttgaatgtggtcacgatgtcgttatattattagactct
attactcgcttagctcgtgcttacaacactgtgcaaccagcttctggcaaggtattaagt
ggaggtgttgatgctaatgccttacaaaaacctaaacgcttttttggggctgcacgtaat
gtagaaaacggcggatcattaagcatcattgctactgcattaacagaaacaggctccaaa
atggacgaagtaatctttgaagaatttaaaggtactggtaacatggaacttcaattagat
cgtaaaattgctaatcgccgcattttcccttctgtagatcttacttcatctagtacacgt
cgtgacgaccttttattagacgaaaaaaccattcaacgtatgtggatcatgcgtaaatac
ttagcagacatgaactctgtagaagcaatggaatttattaatgatcgctttaagaagact
cgaaacaatgaagaatttttaatatctatgaatgattaa
DBGET
integrated database retrieval system
