Flagellimonas cixiensis: ABT310_00185
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Entry
ABT310_00185 CDS
T11190
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcx Flagellimonas cixiensis
Pathway
fcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABT310_00185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcx03019
]
ABT310_00185
03009 Ribosome biogenesis [BR:
fcx03009
]
ABT310_00185
Enzymes [BR:
fcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABT310_00185
Messenger RNA biogenesis [BR:
fcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABT310_00185
Ribosome biogenesis [BR:
fcx03009
]
Prokaryotic type
rRNA helicases
ABT310_00185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
AAA_22
Cas3-like_C_2
DUF3194
Motif
Other DBs
NCBI-ProteinID:
XHB44779
LinkDB
All DBs
Position
38267..40051
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AA seq
594 aa
AA seq
DB search
MTKFEALGLDQPLLDAISDLGFESPSEVQEKAIPILLDQETDLVALAQTGTGKTAAFGFP
MIQKIQEESRTTQGLILSPTRELCLQITNELKLYSKYVKGLNVVAIYGGASITEQARQIK
RGAQIVVATPGRMKDMIGRGMVDISKIDYCVLDEADEMLNMGFFEDIKDILSNTPKEKFT
WLFSATMPKEVSTIAKKFMHKPVEITVGTVNAGATTVQHEYYVVGGRDRYAALKRLADAN
PGIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQVQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSELRKIKSIESK
IKQEFIKKNIPDGMEICEIQLYHLANKIKDTKVNQEIESYLPAINDVLEGIDREELIKKI
FSVEFTQFYNYYSKTKDLNSADSGKDKGDGKGAKGEIPNEGSVRYFINVGERDGYDWMSL
KDFLRDTLNVEKEDIFNVDTKDSFSFFNSDAHLAEFILQTFSEFKLEGRFINVEISTKPG
GGGGGKGGKKRSGRKGGGRRGGNSSYKGGSKSGSRGGNKGGYGKKGGKKRSGFY
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagccttggggttagatcaacccctattggatgctatttccgacctc
ggatttgaatccccctcagaagtacaagaaaaagcaatccctattttattggaccaagag
accgatttggttgccttggcacaaacaggaaccggtaaaaccgcagcttttggttttcct
atgatccaaaaaattcaggaagagagcagaaccacacaaggtttgatcctttctcctact
cgtgaactgtgcttacagatcactaacgaattaaaactttactccaaatacgttaaagga
ctgaacgtggttgccatttatggtggtgccagtattacggaacaggccagacaaattaaa
agaggggcccaaattgttgtggcaaccccgggtcgtatgaaggatatgattggccgagga
atggtcgatatttccaaaatcgattattgcgtattggatgaggcagatgaaatgttgaac
atgggcttttttgaagatatcaaggatattctttccaatacgcccaaagaaaagttcaca
tggttgttttctgccaccatgcccaaagaagtttctaccattgccaaaaagttcatgcac
aaacctgtggaaatcaccgtaggaactgttaacgcaggtgcaactaccgtacaacatgaa
tattatgtagttggaggtcgtgaccgttacgcagcccttaaacgtttggctgatgccaac
cccggaattttctccgttgtattctgtagaaccaaaagagatacccaacgtgttgctgaa
aaattgattgaagatggctacaatgctggtgcacttcatggggatttgagtcaaaaccaa
agagatttggtcatgaactctttccgtaaaaagcaagtacaaatgttggtggctaccgat
gttgcggcccgtggaattgatgtagatgatataactcacgtaatcaactaccaattgcca
gatgaaatcgaaacctacacccaccgaagtggacgtacaggtagagcaggaaaatcaggt
atttccatggtcattgtaacgcgttcagagcttcgcaagatcaaatccatagaaagtaag
atcaaacaggaattcattaagaaaaatattcctgatggtatggaaatctgtgagattcag
ttgtatcacttagccaacaaaatcaaagacaccaaggtcaaccaagaaatagaaagttac
ttgcctgccattaacgatgtgttggaagggattgaccgtgaagaacttattaaaaagata
ttctctgtagaatttacccaattctacaactattacagtaaaaccaaagacctaaacagc
gctgacagcggtaaagataagggagatgggaaaggcgccaagggcgaaattccaaatgaa
ggctccgtgcgttactttattaatgttggggaacgcgatggttacgactggatgtccctt
aaggatttcttaagagataccttgaacgtagagaaagaggacatttttaatgtggacacc
aaggatagtttctctttctttaattccgatgcacatttagccgagtttattttacaaacc
tttagcgaatttaaattggaaggtcgctttatcaacgttgaaatttccactaaaccaggt
ggcggtggcggcggaaaaggtggcaaaaagcgtagcggaagaaaaggtggaggccgaaga
ggtggaaacagctcttataaaggaggcagcaaaagtggaagcagaggtggaaacaaagga
ggttacggtaaaaaaggaggcaaaaaaagatctggcttttattag
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