Fragilariopsis cylindrus: FRACYDRAFT_135945
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Entry
FRACYDRAFT_135945 CDS
T04784
Symbol
DDB1_1
Name
(GenBank) CPSF_A-domain-containing protein
KO
K10610
DNA damage-binding protein 1
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03420
Nucleotide excision repair
fcy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
FRACYDRAFT_135945 (DDB1_1)
09124 Replication and repair
03420 Nucleotide excision repair
FRACYDRAFT_135945 (DDB1_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fcy04121
]
FRACYDRAFT_135945 (DDB1_1)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_135945 (DDB1_1)
Ubiquitin system [BR:
fcy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
FRACYDRAFT_135945 (DDB1_1)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
FRACYDRAFT_135945 (DDB1_1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
FRACYDRAFT_135945 (DDB1_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-ProteinID:
OEU20889
JGI:
135945
UniProt:
A0A1E7FRV4
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
VLNAPINGRITSLTAIQLDSKLTSLLFITTDQHQYAIIGYDSQLTPHYIRTYASGSLKDE
WNTLGQISECGPLVTIDPYSRCIVLHLYDGLVTVFPIRNATVVAAGVFHARLEERTVLAM
TVLHHLDPIETPPHLCVLHQDSRGNQHVTTHVVDLHNSQVLTQASYSSRLDGGSSLLIPK
KHNATSGGVVVLGQRQITYCARNYYKVLPIPPALILSWDALPPDASGMTRYLLGDEFGNL
HMLTLITAAAAAKNNKSISSTGNDNNNKIVALQLDTLGSCTLTSCLQYLDHGLVFCGSQL
GDSQLVQIHDKPIPVEDDEDDNTTFLSVIEEYTHLGPIVDFDLVPMAGMGQSQVVTASGS
SKSGSLRVIRNGIGMKEYANVELSGIQSMWNLRGSYEDDRDSFLVQSFVGETRVLGVISS
DEQTGDDDVVLPGLESNASTLHISNIVGNLFLQVTETELRLVTPEGEVLDTFNPNINITV
AAGNEAGQTAVALTGGKVIYFEVDNKKLIQRSSKQMDREVSCLNMNPFLPEESTTRMDGK
RRNRNNMMARSLCLITLDFSSSSESTSSSSHGGSTAPLSSGSVPGVNMLLVGLGDGTLVS
FAVIEGDHVRVQSKKEVSLGTQRINLIPLKNGRGGNCVLATGDRPTVIYLAGMGGASGRA
NYNPKLCYSNVNLSPIDDGDSTPFCSPLLFDDTGNEHYSLCVADDSNLRLGIIDDIQKLH
VTTYRLGMAPRRVVRCSEGRMFAVGCIESGIKELGIEGEQMAMGNCIRFLDDSTFEDIHR
IDLEPTEMILSMSVVGSMMQLKSYLVVGTAYVLHDEDEPTKGRILVYSCNPEDNPTEGTT
NRSVKLVTELQVRGGVYSISQFFNGKILATVNSKTQLCEMMNDGTGVIKLSFVGVGHHGH
ILSLFVSNREMLAIVGDLMRSISLVQYYPQYETLEEVARDFNANWTTAVTMLTDDVYLGG
ENWNNLFVLRRNTKAQSEEVRCRLETVGEFHLGEMCNKFMSGSLVMPNSSSDTPVVAIGS
QTLFGTADGTLGVILGLDNATAAFFSCLEKAMEHVIMPIGNFSHEQFRSFSAEQRINPRH
GFVDGDLVESFLDFDMKTMELVVQQMN
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
gttttaaatgctcccatcaacggtcgtattacatcattgacagcaattcaactggattcc
aaactgacctcactgttattcataacaacagatcaacatcagtacgctatcattggatac
gattcacaattgacaccccactacatacgcacatacgcctcaggatctcttaaggatgaa
tggaatacattgggacaaatatcggagtgtggaccattggtaacaatcgatccatattcg
agatgtatagttttgcatctctacgatggtctcgttactgttttccctattcgaaacgca
acagtcgtcgccgcaggagtttttcatgcacgtcttgaagaacgaacagtcctggcaatg
accgtcttgcatcatttggatccaatcgaaacacctccgcatctatgcgtcctgcaccaa
gattcgagaggcaatcaacacgttaccacccacgttgttgatttacacaattcacaagtg
cttacccaggcatcatattcctcccgactcgatggaggctcttcgctcttgattccaaaa
aaacataatgcaacttcgggcggcgttgttgtcctaggacaacgacaaattacgtattgc
gcacggaactactataaagtcttaccgattccacccgcattgattcttagttgggacgcg
ttgccgcctgacgctagcgggatgactcgatacttgttgggggatgagtttggaaatcta
cacatgctaacactgattaccgcagctgctgccgcaaagaataacaaatcaattagcagt
accggcaatgacaacaacaataagattgtagccctgcagctggatacattagggtcgtgc
acgttgactagttgtttgcaatacttagatcacggtcttgttttttgcggaagccaactc
ggtgattcgcaactggtacaaattcacgacaaaccgattcccgtagaggatgacgaagat
gacaatacaacatttttaagtgtcatcgaagaatatacacatttgggtcccatcgtggac
tttgatctggtccccatggcaggaatgggtcagtctcaagttgtcacggcgtcggggtcg
tcaaagtcgggatcgttgcgcgttattcggaatggtattggaatgaaggaatacgcgaat
gtggaactgtcaggtattcaaagcatgtggaatttgcgaggatcgtatgaagatgaccga
gattcgttcttagttcagtcttttgtgggggaaacacgtgttttaggggtaatttcaagc
gatgaacaaacaggagatgacgatgtcgttttaccgggcttggaatccaatgcatctact
ctacatatcagcaatattgttggaaaccttttcttacaagttactgagactgagctccga
ttggtaacacctgaaggtgaggttttggacacgtttaacccaaatattaatataaccgta
gccgcaggaaatgaagcgggtcaaactgcggttgctctaacgggcggtaaggtgatttat
ttcgaggttgataacaagaaactaatccagcgctcttcaaagcaaatggatcgggaagtc
agttgcttgaatatgaatccatttctaccagaagaatctacaactagaatggatggcaaa
cgacgcaatcgcaacaacatgatggctagatcgctgtgcttgataactcttgatttttct
tcgtctagtgaatcaacttcatcttcgtcgcatggtggtagcactgcacccttaagtagc
ggttctgttccaggagtgaacatgcttctggtggggcttggggatggtactttggtttcg
ttcgcagttatagaaggcgatcacgttcgtgttcaatcgaagaaagaagtgagtctagga
acccaacgaatcaatctcattcctcttaagaacggacgcggtggtaactgtgtactggca
actggtgatagaccaacagtgatatatcttgcaggcatggggggagcttctggaagagca
aattacaatcctaaattgtgctactcgaacgtcaatcttagccctatcgatgatggagac
tcaactccattctgtagtcctttgctctttgatgacactggtaacgagcactatagcctc
tgcgtagcagacgattctaacctacgtttgggtatcatcgatgatattcaaaagcttcat
gtaactacctatcgattgggaatggcaccacgtcgagtggtacgctgttctgaaggacgc
atgtttgctgtaggttgcattgagtctggtattaaagaattaggtatcgaaggggaacaa
atggcgatgggaaactgtattcgatttcttgacgattcgacatttgaagatatacatcga
attgatctagaaccgacagaaatgatcttatccatgtcggttgttggatcaatgatgcaa
ctaaaatcgtatttggtcgttgggactgcatacgtgcttcatgacgaagatgagccaaca
aagggacgtatcttagtttattcttgcaatcctgaagacaatccgacagagggtacaaca
aaccgatcagtaaaactggtaaccgagctacaggtccgaggaggtgtatactctatcagt
caatttttcaatggaaaaatcctggccactgtcaactcaaagacacaactttgtgagatg
atgaacgatgggactggtgtaatcaaattgagttttgtaggagtgggacatcacggtcat
attcttagcttatttgtctcgaacagggaaatgctagcaattgttggtgatctaatgcgt
tctatctcactagtccaatattatccccagtacgagacactggaagaggtggcccgagat
tttaatgctaactggacaactgcagttacaatgttaaccgatgatgtctacctaggagga
gagaattggaacaatctatttgttttacgtcgaaataccaaggcgcaaagcgaggaagtt
cgttgccgcttagaaacagttggagaatttcatctaggggaaatgtgcaacaagtttatg
agtggaagtcttgtcatgcccaatagctctagtgatacacctgttgttgctattgggagt
caaacactctttggcactgcggacggtactttgggtgtcatcctcggtctagataacgca
actgcggcgtttttttcttgtttagaaaaggctatggaacatgtaattatgccaataggt
aacttcagccatgaacaattccgatccttcagtgcggaacaacgtattaatccacgtcat
ggtttcgtggatggtgatcttgttgaatctttcctagattttgacatgaaaacaatggag
cttgtagtacaacaaatgaat
DBGET
integrated database retrieval system
