Fragilariopsis cylindrus: FRACYDRAFT_136548
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Entry
FRACYDRAFT_136548 CDS
T04784
Symbol
XAB2
Name
(GenBank) TPR-like protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_136548 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_136548 (XAB2)
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_136548 (XAB2)
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
FRACYDRAFT_136548 (XAB2)
Spliceosome [BR:
fcy03041
]
Complex B
Other components
Prp19-related factors
FRACYDRAFT_136548 (XAB2)
Complex C
FRACYDRAFT_136548 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
TPR_15
TPR_2
TPR_9
TPR_CcmH_CycH
TPR_17
ARM_TT21
NRDE-2
ARM_TT21_C
Motif
Other DBs
NCBI-ProteinID:
OEU21332
JGI:
136548
UniProt:
A0A1E7FT30
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
EDTVSGDPYNVNAWTIYLEEIDQTQTQQNNAPSLRGLVQLRDMVGRRSVQLLPRSYKLWK
LHWEFVLSRCHDLGGSSTVLSCFERAIVTLHKFPRVWMAYLEFAHNQQSRHQHEDENEGK
NDDDQNDDIAIHPTQLRHLVNRALEAIPVTQHDKIWPVLLKYYQSNNASTAAKYIPKESK
LSVLRRYVQYNPAATKEVADFLADDLGQWGEAALMYVDLLNHDDVRDGGGAGTSGGTSRP
NDSVTSTTAAQRKDFSNIKSGTGALRYLPREMEGVLWSQLADAWIRRGEFQLARSVYEEA
IESVSRVRDFTILMDAYLQFEEGLLEATMETEDLTARRPVLLNGVLLRQNPDDVGEWLKR
ARLYKENGQVHQAAAALEEGLKTVKARRTVGGNSNQMVLQLAKIYEEDCKEVAKSRNLFD
RICNQWVYEFKNVDDLAECYVAWVELELRQETWDDALDIIRTSVIIPPFAPKWIRGLPKS
LRLWDLLLDLEESLGTAQTTKDAYSRAIEQKVATPLHILNFATFLTEQKYFEESFSAYER
GIELFQYPGVKLIWKSYLDSFLKRYGETKLERTRDLFQRCLDACPPEESTEFFLTNGKYE
EEHGLTKRALGVYHQMCKTVPGEDKYTAYQLFIAKTAKYLGQTATRDIYQNAIQDLEDGA
AAKLCLDFASMETSLQEFDRARAVLTYGAQMADPRRNEEYWKAWNEFEISHGNEETFREM
LRIKRSVEASYST
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gaagacactgtcagtggggatccatacaatgtgaacgcatggacgatatacttagaagaa
atagatcagacacagacacaacaaaataatgctccctctctcagaggactcgtccaactt
cgtgacatggttggtcgccggtccgttcaacttctaccccgatcgtacaaattatggaag
ctacactgggaatttgttttatcgcgttgtcatgatctgggagggtcgtccacagtcttg
agttgtttcgaaagagcgattgtgacgcttcataagtttccaagagtatggatggcatac
ttagaattcgctcacaatcaacaatcacgacatcaacacgaagacgaaaatgaaggaaaa
aatgacgacgatcaaaatgacgatattgccatccatcccacgcaacttcgtcatttagta
aatcgggcgttagaggcaataccggttactcaacacgacaaaatatggccagttttgtta
aaatattatcaaagtaacaacgctagtaccgccgccaagtacattccgaaggaatccaaa
ctgtccgtcttgagacggtacgtacagtacaatccagccgcaacgaaggaagttgctgat
tttttagctgatgatttgggacaatggggtgaagcggcattgatgtacgtcgatttgctc
aaccacgacgacgttcgtgatggcggtggcgccgggacgagtggtggtaccagccgtcca
aacgattcagtaacatcaactaccgccgcgcaacgcaaggattttagcaacattaaaagt
ggaacgggagcgctccggtacttgccgcgagaaatggagggtgtattgtggagtcaacta
gctgatgcatggattcgacggggagaatttcaattggcccgttctgtgtacgaggaggca
atcgaatcagtttctcgagtacgtgacttcactatcttaatggacgcgtacttacaattc
gaagagggcctattggaagctactatggaaactgaagacttaacagcgcgtcgaccggtt
ctgctcaatggtgttctactacgacaaaatccagatgacgtaggagaatggctaaaacga
gctcgattgtacaaggagaatggccaagttcaccaggcggccgccgctttggaagaaggt
ctaaaaactgtcaaggcccgacgaaccgtgggtggaaattccaatcagatggttctacaa
ctggcaaaaatttacgaagaagattgtaaggaggtagccaagtcgcgcaatctttttgat
cggatatgtaatcaatgggtctatgagttcaaaaatgtcgacgacttggcggaatgttat
gtggcatgggtagaactagagctccgacaggagacttgggatgacgccttagatattata
aggacaagcgtgataattccaccctttgctccaaaatggattcgaggcctacctaaatca
ttgcgactatgggatttgctcttggatttagaagagtcgcttggaacggcccaaactact
aaggatgcatacagccgtgctattgagcaaaaggtagccactcctcttcatattttgaac
tttgccacttttttgacggagcaaaaatattttgaggaatcttttagtgcttatgagcgt
gggatagaactctttcaatatcctggtgtcaaactcatttggaaatcatacctggattca
tttctaaaacgctacggagaaaccaagctagaaagaacccgggatctcttccaacgatgt
ctagatgcctgtccacccgaggaaagtactgaattctttctaacaaatgggaagtacgaa
gaagaacacggtttgacgaagcgagcattgggtgtgtaccatcaaatgtgtaaaacagta
ccaggagaggacaagtatacggcgtaccaactctttattgccaaaacagcgaagtaccta
ggtcagactgccactcgtgatatttaccaaaatgccattcaagatttggaggatggtgca
gcagccaaactttgtttggactttgccagtatggaaacctctcttcaagaatttgataga
gcccgggccgtcttaacctatggtgcacaaatggcagatcctcgacggaatgaagaatac
tggaaggcatggaatgagtttgagatttctcacggtaacgaagaaacctttcgtgaaatg
ctacgtatcaaacggagtgtagaagcatcctattccact
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