Fragilariopsis cylindrus: FRACYDRAFT_147555
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Entry
FRACYDRAFT_147555 CDS
T04784
Name
(GenBank) SNF2_N-domain-containing protein
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcy03021
]
FRACYDRAFT_147555
Transcription machinery [BR:
fcy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
FRACYDRAFT_147555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
DEAD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
OEU18604
JGI:
147555
UniProt:
A0A1E7FKF3
LinkDB
All DBs
Position
Unknown
AA seq
543 aa
AA seq
DB search
LRNYQLEGVSWLRFLQSINLNGALCDSMGLGKTLQAILAVSLAHMDYADDEEQAKSLVIC
PASIVGHWVNEIKRYFPGNSVFHALPFVGNAQQRKVLLESKLIPCNLIVTSYEILRSDID
ALSKVNWTYCILDEGHLLRNPKTLTARASRRLRARHKLILTGTPIQNSVNEVWATFDFLM
PNFLGSSSQFSKEFARPIIKGQNFDAAALDIATGIEKLKLLHQQVLPFILRREKEQVLKE
LPPKIITRIPCPMSTIQEDLYHRFCSDQQGKQSISSLDKIVNTTHPSDANKSSMLSPEVL
KSLLYLRLLCTHPWLVRANKQGPKNQHMHDSRYILEASGKLVALRELLRDAGMNFNELTA
ADNDSSLLYCDKDEEEQNISDRNGSRCLIFGQFTNSLDIVEELLLKRHMPSVEYLRLDGR
VPASKRSGIVDKFNRDDSIKILLLTTKIGGLGLNLTGADTVIFLEHDWNPHTDLQAMDRA
HRIGQKRTVHVYQLVTMNSIEEKTMLIHERKLAMSKAIVNTDNSSMYSMGTDRLLDIFQF
RSE
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
ctaagaaattatcaactcgaaggagtttcttggttacgatttctccaaagtatcaacctt
aacggtgcgctctgtgactctatgggactagggaaaactttacaagctatattggcggta
tctttggcccatatggattacgctgatgacgaagaacaagccaagagcttagttatttgt
ccggcaagtattgttgggcattgggtaaacgaaattaagaggtatttccccgggaattca
gtatttcatgcattgccttttgtaggcaacgcccagcaaaggaaagttttgctggaaagc
aagctaataccttgtaacttgattgtaactagctatgaaatattgaggagtgacattgat
gcgctttccaaagtaaattggacgtattgtattctcgacgaaggtcatctcttgaggaat
ccaaagaccttgactgcaagggcctctaggcgattgcgagctcgtcacaagctcattctc
actggaactccaattcagaacagcgtgaacgaggtatgggcaacatttgattttctcatg
cctaattttcttggatcttcatctcagttctctaaagaatttgcccggccgattatcaaa
ggccaaaatttcgatgcagcagcacttgatattgcgaccggaatagaaaagctaaaacta
ttgcatcaacaagtactaccttttatcctgagaagagaaaaagaacaagttttgaaggaa
cttcctccaaaaattatcacaaggatcccatgcccgatgagcactattcaagaagatcta
tatcatcgattttgttctgatcaacaagggaagcagtcgatatcatccttggacaaaata
gtgaatacaacgcatccatccgatgcaaataaatcatctatgctgagcccggaagtctta
aagtcgcttttatatcttcgtttgttgtgtacccacccatggttggtcagggcaaacaaa
caaggaccgaaaaaccagcatatgcatgacagtcgatacatcctagaagcatcgggcaaa
cttgtagcattacgagagcttttaagagacgctggtatgaattttaatgagcttactgct
gctgacaacgattcgtcgctgctctattgcgacaaggatgaagaggaacaaaatatatca
gacagaaatggatcaagatgtttgatatttggacagtttacaaatagtctggatattgtg
gaggaacttttactgaaacggcatatgccatctgtcgaatacctcaggctcgatggaagg
gtgccagcttcaaaacgatcaggtattgtcgataaattcaatcgagacgacagcatcaaa
attttgcttttgacgaccaaaatcgggggcttaggattaaatttgaccggagcggatact
gtgattttcctcgagcatgactggaacccacatacggatctccaagctatggaccgtgct
catcggattggacagaaacggactgtccatgtgtaccagttggtgacaatgaattctatt
gaagaaaagacaatgctgatacatgaacgaaaattagccatgagtaaggctattgtcaac
actgacaattcttcgatgtatagtatgggaactgaccgtctacttgacatctttcaattt
agaagtgaa
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