Fragilariopsis cylindrus: FRACYDRAFT_152761
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Entry
FRACYDRAFT_152761 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K12587
exosome complex component MTR3
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_152761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_152761
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FRACYDRAFT_152761
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
SusG_CBM58
euk_SelB_III
Motif
Other DBs
NCBI-ProteinID:
OEU20047
JGI:
152761
UniProt:
A0A1E7FPH7
LinkDB
All DBs
Position
Unknown
AA seq
223 aa
AA seq
DB search
VITRALGSSLVELGHTKVIAEVQIAAAATSSNNNNKSGSNCNEATTTNTTQQSAGKLNQE
ITLRESDLSRRLTASLLPVIILEKYPKCTIIVTTTVLQDDGSCLSAAITAASMALVDARV
ELRDVVTSCTVAVVENPNTNSNNKEEEEEEEDRWLYLADPTEREVTTTSTNVALICLAMT
PNHKEVTLWSQSGRLSSDMASHAMELCRDGCRTMHKFMRESWI
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
gttataacacgtgcattaggttcatcattggttgaacttggtcatacaaaagtgatagct
gaagttcaaatcgctgctgcggcaactagtagtaataataataacaaaagtggtagcaat
tgtaatgaagctacaacaacaaatacaacacaacaaagtgcaggaaaattaaatcaagaa
attacattacgtgaatcagatttgtcacgtcgattaactgcatcattattacctgtaata
attttagagaaatatccaaagtgtacaattattgttacaacaactgtattacaagatgat
ggtagttgtttatcagcagcaattacagcagcatctatggcattagttgatgcacgtgtt
gaacttcgtgatgttgttacaagttgtacagtagccgttgttgagaatcctaatactaat
agtaataataaagaagaagaagaagaagaagaagatcgatggttatatttagctgaccca
actgaacgagaagttacaacaacaagtactaatgttgcattaatttgtttagcaatgaca
cctaatcataaggaggtaacactatggagtcaatcaggtcgattatcatcggatatggca
tctcatgcaatggaattgtgtcgtgatgggtgtcggactatgcataaatttatgagagaa
tcatggata
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