KEGG   Fragilariopsis cylindrus: FRACYDRAFT_154934
Entry
FRACYDRAFT_154934 CDS       T04784                                 
Name
(GenBank) Sm-like ribonucleo protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FRACYDRAFT_154934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcy03019]
    FRACYDRAFT_154934
Messenger RNA biogenesis [BR:fcy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FRACYDRAFT_154934
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     FRACYDRAFT_154934
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-ProteinID: OEU15205
JGI: 154934
UniProt: A0A1E7FB09
LinkDB
Position
Unknown
AA seq 103 aa
YLPGSSSLVEELDQRIMIVLRDGRHLVGTLRSFDQFSNMVLDNASERRFHNQSNSKIIDE
DGNTNNSTNKKITYFTDVPLGMYIVRGDSVVLLGQVGSEEEEE
NT seq 309 nt   +upstreamnt  +downstreamnt
tatttacccggatcatctagtttggtagaagaattagatcaaagaattatgattgtttta
agagacggtcgccatttggttgggactctccgatctttcgatcaattcagtaacatggta
ttggacaatgcgtccgaacgaaggttccataatcaaagtaacagcaagattatcgacgaa
gacggcaacaccaataacagtactaacaaaaagattacatacttcacggatgtaccattg
gggatgtatattgttcgtggtgattcggtcgtattactcggtcaggtggggtctgaagaa
gaagaggaa

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