Fragilariopsis cylindrus: FRACYDRAFT_154934
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Entry
FRACYDRAFT_154934 CDS
T04784
Name
(GenBank) Sm-like ribonucleo protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_154934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_154934
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FRACYDRAFT_154934
mRNA degradation factors
5'-3' decay
Lsm complex
FRACYDRAFT_154934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-ProteinID:
OEU15205
JGI:
154934
UniProt:
A0A1E7FB09
LinkDB
All DBs
Position
Unknown
AA seq
103 aa
AA seq
DB search
YLPGSSSLVEELDQRIMIVLRDGRHLVGTLRSFDQFSNMVLDNASERRFHNQSNSKIIDE
DGNTNNSTNKKITYFTDVPLGMYIVRGDSVVLLGQVGSEEEEE
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
tatttacccggatcatctagtttggtagaagaattagatcaaagaattatgattgtttta
agagacggtcgccatttggttgggactctccgatctttcgatcaattcagtaacatggta
ttggacaatgcgtccgaacgaaggttccataatcaaagtaacagcaagattatcgacgaa
gacggcaacaccaataacagtactaacaaaaagattacatacttcacggatgtaccattg
gggatgtatattgttcgtggtgattcggtcgtattactcggtcaggtggggtctgaagaa
gaagaggaa
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