KEGG   Fragilariopsis cylindrus: FRACYDRAFT_157228
Entry
FRACYDRAFT_157228 CDS       T04784                                 
Symbol
MSH2_a
Name
(GenBank) MutS_V-domain-containing protein
  KO
K08735  DNA mismatch repair protein MSH2
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    FRACYDRAFT_157228 (MSH2_a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_157228 (MSH2_a)
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     FRACYDRAFT_157228 (MSH2_a)
SSDB
Motif
Pfam: MutS_V MutS_IV MutS_III AAA_22 Cep57_MT_bd LcrG
Other DBs
NCBI-ProteinID: OEU22207
JGI: 157228
UniProt: A0A1E7FVQ3
LinkDB
Position
Unknown
AA seq 422 aa
LYQQVTQLVAELQRSVGLAEAVLNLEKAPEEFLVKPEYDEVLEELSRELETVHSSVKDEH
EAIQDAWNDVQTRGGKSTQVRLERVEDNTAWQFRLPDANDSKMVQNVGQKIKTHRILKNG
VYFSSLELRQLSAKYQDLQSEYNQLSRKIVRDAMSIASTYSTVVERAADAIGVLDVFCSL
AHTAAMSPHGYCKPNMTDSDEDNAGIKLEGARHPCVELQENIDYIPNDINLTFPKAQLLV
SGPNMGGKSVYIRSLGAIVCMAQIGSYVPCTSATINICHSILARVGAGDLQERGISTFMA
EMLESSAILRAATKRSLIIIDELGRGTSTFDGYGLARAILEYLMDRVGCIVVFATHFHEL
THLPRVKNCHVTAQKGSQGLTFLYAVKSGACSESFGIQVAEMAHVPRAVIEDAKKRAREL
ES
NT seq 1266 nt   +upstreamnt  +downstreamnt
ttgtatcaacaagttacacaactggtggctgaattgcaacgatcagttggattggccgaa
gctgtcttgaacttggagaaagcacccgaagagtttctggttaaaccggagtacgacgaa
gtgctagaagaattgtctcgagaacttgaaactgtccattcgtctgttaaagatgaacac
gaagctattcaagatgcgtggaatgatgtccaaacgagaggaggaaaatcgacacaagtt
cgtttagaacgggtagaagacaatacggcttggcaattccgtttgccagacgctaatgac
agcaagatggttcaaaatgttggtcaaaagatcaagacccatcgtattcttaaaaacgga
gtatacttttctagtttagaattacgtcaattgtcagcgaagtatcaggacctgcaatca
gagtataatcaactgtctcgtaagattgttcgtgatgcaatgagtatcgcctccacctac
tcgactgttgtcgaacgagctgctgacgcaattggtgttttagacgtcttttgctcattg
gcacatacggcagccatgagtccacacggatattgcaaaccaaacatgactgacagcgac
gaagataatgctggaattaaattagaaggtgcacgtcatccatgtgtggaactccaagaa
aacatcgattacatcccaaacgacatcaacctgacctttccgaaagcacaattgctagtg
agcggtccaaatatgggtgggaaaagtgtttacatacgatcgcttggggctattgtttgt
atggcacaaattggaagttatgtcccgtgcacttccgcaactatcaatatttgtcactcc
attttggcccgggttggtgcgggggatttgcaagaacgaggtattagtaccttcatggca
gaaatgctcgagtcctcggcaattttacgcgcagctacaaaacgaagtttgatcatcatt
gacgagttaggtcgtggtacatctacatttgacggttatggccttgccagagctattttg
gaatatttaatggatcgtgtcggctgcatcgtagtcttcgcaactcacttccacgagctc
actcatctcccacgggtgaagaactgtcacgtgactgctcaaaaagggagtcagggtttg
acatttttgtatgccgttaaaagtggtgcttgttctgagtcgttcgggatacaagtagcc
gaaatggcccacgtcccccgcgctgtcattgaagatgcgaagaaacgagccagggagctt
gaaagc

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