Fragilariopsis cylindrus: FRACYDRAFT_157247
Help
Entry
FRACYDRAFT_157247 CDS
T04784
Name
(GenBank) P-loop containing nucleoside triphosphate hydrolase protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_157247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_157247
03012 Translation factors [BR:
fcy03012
]
FRACYDRAFT_157247
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FRACYDRAFT_157247
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
FRACYDRAFT_157247
Translation factors [BR:
fcy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
FRACYDRAFT_157247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_N
AAA_19
HA2_C
AAA_22
ATPase
nSTAND3
T2SSE
Cas3-like_C_2
UvrD-helicase
BUD22
Motif
Other DBs
NCBI-ProteinID:
OEU11976
JGI:
157247
UniProt:
A0A1E7F1I2
LinkDB
All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
METQRKALPIHNIRNDLIDKLKTSQVIVVSGGTGSGKSTQCPQYILEDAIQNNQGSTTKI
LVTQPRRIAAISVSERVSQERYEKDASSDNSSVGYAVRFKSKKPRNIGGSIEFVTTGILL
RRLLGDDSLLQDISHVMIDEVHERDINTDFLLILFRDLLKKRPDLKLILMSATLDAESFG
EYFASNNLTTEVPVLSVPAKPRHPVEVHYLEDLLKMNDEDNYNNNIETEEEQEDDSSRKD
TSSTSSSSSSSYTKKNNKIDFRVTMTGLVSEIALHLSQIETDSDRSGSILCFLPGMDEIK
QCMKYIEENCSRDLRNKIQILPLHSTIPQDDQQKVFLPAKPGTIKLILSTNIAESSVTID
DVLAVVDSGLVREMNFDAQTAMNAMETNPTSKASATQRLGRAGRVAPGKCYRLYTRSNLS
LMDDRPTPEIQRTALEATCLQTCSLINSSSDDDSDDNTDITGVEDFLSRAMDPPVDGAIA
FAMDRLTKLGAIATNHNRNGREYLTPLGRTLARLPLDPATGKMLVMGVVMKCLDPLLTAA
SCFSSRNAF
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacaacggaaagcattaccaatacataatatacgtaatgatttaattgataaa
ttaaaaacatcacaggtgatagttgttagtggtggtactggatcaggtaaatcaactcag
tgtccacaatatatattagaagatgcaatacaaaacaatcaaggtagtacaactaaaatt
ttagtaacacaaccaagacgtattgcagcaattagtgtgagtgaacgtgtatcacaagaa
cgatatgaaaaagatgcctctagtgacaactcatcagttggatatgcagtacgatttaaa
tctaaaaaaccaagaaatataggtggtagtatagaatttgtaacaacaggtatattattg
agaagattactaggtgatgattcattattacaagatatatcccatgttatgattgatgag
gtacatgaacgtgatattaatactgattttttattaatattatttcgtgatttattaaag
aaacgtcccgaccttaagttgattttaatgtcagcaacgttagatgcagaatcatttggt
gaatattttgcatctaataatctaactactgaagttcctgtactaagtgtaccagcaaaa
ccacgtcatccagtcgaggtacattatcttgaagatctactcaagatgaacgacgaggat
aattataataataatatcgaaacagaagaagaacaagaagatgatagcagtagaaaagat
acatcttcaacatcgtcatcatcgtcgtcatcctatacgaagaaaaataacaagattgat
tttcgtgttaccatgacaggactggtttctgaaattgctttacatttaagtcaaatcgaa
acagattcagatcgttcgggtagtattctatgtttcctacctggtatggatgaaattaaa
caatgtatgaagtacatagaagaaaattgttcacgtgatttacgtaataaaattcaaatc
ctaccattgcattcaaccataccacaggatgatcagcaaaaagtatttctgcccgctaag
cctggaacaataaaattaattttatcaacaaatatagcagaatcatctgtaacaattgac
gatgtacttgctgttgttgatagtggattagtacgtgaaatgaactttgatgcgcaaaca
gcaatgaatgcaatggaaacaaatccaacatccaaagcatcagcaacacaacgattaggt
cgtgctggtagagttgcacctggtaaatgttatcgactatatacacgtagtaatttatct
ttaatggatgaccgaccaacacctgaaatccaacgtactgcattagaagcaacatgctta
caaacatgttctttgataaactcatccagtgatgatgacagcgacgataatactgatatt
actggtgtagaagattttctatcacgtgcaatggatccacccgttgatggtgctattgca
ttcgctatggacagattaacgaaacttggtgcaatcgctacgaatcataacagaaatgga
cgagaatatctaacaccacttggacggactctcgcacgtttgccattagatccagccacg
ggtaaaatgcttgttatgggtgttgttatgaaatgtcttgatcctttattaacagcagca
tcatgctttagtagtagaaatgcattc
DBGET
integrated database retrieval system
